| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,482,393 – 8,482,500 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 8,482,393 – 8,482,500 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.02 |
| Mean single sequence MFE | -31.85 |
| Consensus MFE | -17.38 |
| Energy contribution | -17.38 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8482393 107 + 22224390 -UUGGGCGUAAAUGUUUGCUCUGUUCUGGUGCAGAUAAGCUGC--GUAAAAUUAUUACGUUAUUUGUAUUGGUUGCAAUCAAC-GC---CCU-CUCACUUGGAAACGAGACACAG -..((((((...((.((((......(..(((((((((....((--((((.....)))))))))))))))..)..)))).))))-))---)).-....((((....))))...... ( -36.60) >DroVir_CAF1 4933 109 + 1 -UAGGGCGUAAAUGUUUGCUCUGUUCUGGUGCAGAUAAGCUGC--GUAAAAUUAUUACGUUAUUUGUAUUGGUUGCAAUCAGACGUUCACCC-CGCACCCCGUAUCACCACUC-- -..(((.((.((((((((...(((.(..(((((((((....((--((((.....)))))))))))))))..)..)))..)))))))).))))-)...................-- ( -32.20) >DroGri_CAF1 5056 101 + 1 -UAGGGCGUAAAUGUUUGCUCUGUUCUGGUGCAGAUAAGCUGC--GUAAAAUUAUUACGUUAUUUGUAUUGGUUGCAAUCAGCCAGCCAGUCGCCCACCUC---------CUC-- -..(((((.....(((.(((.(((.(..(((((((((....((--((((.....)))))))))))))))..)..)))...))).)))....))))).....---------...-- ( -32.30) >DroWil_CAF1 4627 103 + 1 -UAGGGCGUAAAUGUUUGCUCUGUUCUGGUGCAGAUAAGCUGC--GUAAAAUUAUUACGUUAUUUGUAUUGGUUGCAAUCAAC-GA---CA--CCCACC---AAACGUACCACCG -..(((.((...((.((((......(..(((((((((....((--((((.....)))))))))))))))..)..)))).))..-.)---).--)))...---............. ( -27.60) >DroAna_CAF1 44582 106 + 1 -UUGGGCGUAAAUGUUUGCUCUGUUCUGGUGCAGAUAAGCUGC--GUAAAAUUAUUACGUUAUUUGUAUUGGUUGCAAUCAAC-GC---CCU-CUCACUUACCGA-GGGACCCGG -..((((((...((.((((......(..(((((((((....((--((((.....)))))))))))))))..)..)))).))))-))---)).-........(((.-(....)))) ( -33.40) >DroPer_CAF1 32896 110 + 1 UUUGGGCGUAAAUGUUUGCUCUGUUCUGGUGCAGAUAAGCUGCCCGUAAAAUUAUUACGUUAUUUGUAUUGGCUGCAAUCAAC-GC---CCU-CUCACUUAGGAGCAUGCCACAG ...((((((...(((((((.((.....)).))))))).((.(((.(((....((......))....))).))).)).....))-))---)).-........((......)).... ( -29.00) >consensus _UAGGGCGUAAAUGUUUGCUCUGUUCUGGUGCAGAUAAGCUGC__GUAAAAUUAUUACGUUAUUUGUAUUGGUUGCAAUCAAC_GC___CCU_CUCACCUAGAAACGUGACAC_G ...(((((........)))))(((.(..((((((((((.(.....((((.....)))))))))))))))..)..)))...................................... (-17.38 = -17.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:44 2006