Locus 3199

Sequence ID X_DroMel_CAF1
Location 8,471,496 – 8,471,614
Length 118
Max. P 0.948827
window5250

overview

Window 0

Location 8,471,496 – 8,471,614
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 95.76
Mean single sequence MFE -25.66
Consensus MFE -23.58
Energy contribution -22.82
Covariance contribution -0.76
Combinations/Pair 1.17
Mean z-score -1.51
Structure conservation index 0.92
SVM decision value 1.39
SVM RNA-class probability 0.948827
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8471496 118 - 22224390
AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGCGCAAGCGAGAUGGCAGCACAAAAAUACGAUGAUUCCGAAUACGUUUGGCUGCUAUUUAGUACAUAUAU
..............(((((..(((((..((....))....)))))..(((....)))((((((((((.((((.((.((.......)).))...))))))))))))))....))))).. ( -24.80)
>DroSec_CAF1 14239 118 - 1
AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGCGCAAGCGAGAUGGCAGCACCAAAAUACGACGAUUCCGAGUUCGUUUGGCUGCUAUUUAGUACAUAUAU
.......................((((.(((((......((((((...((....)).)))))).(((((((((..((..((....)).))...))))).)))).))))).)))).... ( -24.90)
>DroSim_CAF1 23314 118 - 1
AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGCGCAAGCGAGAUGGCAGCACCAAAAUACGACGAUUCCGAGUUCGUUUGGCUGCUAUUUAGUACAUAUAU
.......................((((.(((((......((((((...((....)).)))))).(((((((((..((..((....)).))...))))).)))).))))).)))).... ( -24.90)
>DroEre_CAF1 20295 118 - 1
AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGUGCAAGCGAGAUGGCAGCACAGAAAUACGACGAUUCCGAAUUCGUUGGGCUGCUAUUUAGUAUAUACAU
..............(((((..(((((..((....))....))))).........((.((((((((((..(....).((((((........)))))).)))))))))).)).))))).. ( -25.30)
>DroYak_CAF1 20960 118 - 1
AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGCGCAAGCGAGAUGGCAGCACAAAAAUACGACGAUUCCGAAUUCGUUGGGCUGCUAUUUAGUAUAUGCAU
..............(((((..(((((..((....))....)))))..(((....)))((((((((((.........((((((........)))))).))))))))))....))))).. ( -28.40)
>consensus
AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGCGCAAGCGAGAUGGCAGCACAAAAAUACGACGAUUCCGAAUUCGUUUGGCUGCUAUUUAGUACAUAUAU
..............(((((..(((((..((....))....)))))..(((....)))((((((((((..........(((((........)))))..))))))))))....))))).. (-23.58 = -22.82 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:37 2006