| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,451,227 – 8,451,320 |
| Length | 93 |
| Max. P | 0.711330 |
| Location | 8,451,227 – 8,451,320 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 82.56 |
| Mean single sequence MFE | -30.08 |
| Consensus MFE | -24.41 |
| Energy contribution | -25.10 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8451227 93 - 22224390 GCAGACGCGUUUGCCCUUUAAGUUAUUAACGCCAGGCGGUGGGGCGGUGCCCACAUCCUC---CU---CCUCCUCAUCGUCCCCCGCCACUAUCGGCUC ((.((.(((((.((.......))....)))))..(((((.(((((((((...........---..---......))))))))))))))....)).)).. ( -31.71) >DroSim_CAF1 4001 96 - 1 GCAGACGCGUUUGCCCUUUAAGUUAAUAACGCCUGGCGGUGGGGCGGGGCCCACAUCCUC---CUCCUCCUCCUCAUCGUCCCCCGCCACCACCGGCUC .(((..(((((.((.......))....)))))))).(((((((((((((..(........---...............)..))))))).)))))).... ( -33.50) >DroEre_CAF1 2043 90 - 1 GCAGACGCGUCUGCCCUUCAAAUUAUUAACGCCGGGCGGUGGGCCGGUAUCCACA---------UCCUCGUCCUCCUCGUCUCCCGCCACCACUGGCUC (((((....)))))................(((.((.((((((.(((.....((.---------.....)).....)))...)))))).))...))).. ( -26.40) >DroYak_CAF1 993 99 - 1 GCAGACGCGUCUGCCCUUCAAGUUAUUAACGCCAGGCGGUGGAUCGGCAUCCACAGCCACCACCUCUUCCUCCUCAUCGUCUCCCGCCACCACUGGCUC (((((....)))))................(((((..(((((...(((.......)))...................((.....))))))).))))).. ( -28.70) >consensus GCAGACGCGUCUGCCCUUCAAGUUAUUAACGCCAGGCGGUGGGGCGGUACCCACAUCCUC___CUCCUCCUCCUCAUCGUCCCCCGCCACCACCGGCUC (((((....)))))................(((((((((.(((((((.............................)))))))))))).....)))).. (-24.41 = -25.10 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:15 2006