| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,450,706 – 8,450,822 |
| Length | 116 |
| Max. P | 0.887867 |
| Location | 8,450,706 – 8,450,822 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.39 |
| Mean single sequence MFE | -39.30 |
| Consensus MFE | -23.27 |
| Energy contribution | -24.65 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8450706 116 + 22224390 UC-UCACGCGGCGUU---UGUACUUUUUGCCUCUUCUGGGGGUUCAGUUCUUCGGCGAUAAUCUCUAUGUCAUCGCUGGACUCGCUGUCCCCCUUGGCAACAUCCGCGGUCGAAGUCUCC ..-...(((.(((..---(((......((((......(((((..((((..(((((((((.((......)).)))))))))...)))).)))))..)))))))..))).).))........ ( -40.70) >DroSim_CAF1 3480 116 + 1 UC-UCACGCGGCGUU---UGCACUUUAUGCCUCUUCUGGGGGUUCAGUUCUUCGGCGAUGAUCUCUAUGUCAUCGCUGGACUCGCUGUCCCCCUUGGCAACAUCCGUGGUCGAAGUCUCC ..-...(((((.(..---..)......((((......(((((..((((..((((((((((((......))))))))))))...)))).)))))..))))....)))))............ ( -43.50) >DroYak_CAF1 472 116 + 1 UC-UCAAGCGGCGUU---UGUACUUUCUGCCUCUUCUGGGGGUUCAGUUCUUCGGCGAUGAUCUCUAUAUCGUCGCUGGACUCGCUGUCCGCCUUGCCAACAUCUGUGGCCGAGGUGUCC ..-....((((((..---.(.(((....(((((.....)))))..))).)((((((((((((......))))))))))))..)))))).((((((((((.(....)))).)))))))... ( -42.10) >DroAna_CAF1 1573 120 + 1 UCCUCAUCUUUCUUUUCCUGAACUUUUGGCUUCUUCUGAGGGUUUAGCUCCUCGGCAAUGGCUUCGAUAUCAUCGCUGGACUCACUUCCAGGUUUGGAGGACUCUGUUGGCGAAUUGUCG ...........................((((....(((((((......)))))))....)))).(((((...((((..(.....(((((......)))))......)..))))..))))) ( -30.90) >consensus UC_UCACGCGGCGUU___UGUACUUUUUGCCUCUUCUGGGGGUUCAGUUCUUCGGCGAUGAUCUCUAUAUCAUCGCUGGACUCGCUGUCCCCCUUGGCAACAUCCGUGGUCGAAGUCUCC ........((((...............((((......(((((..((((..((((((((((((......))))))))))))...))))..))))).)))).(......)))))........ (-23.27 = -24.65 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:14 2006