Locus 3183

Sequence ID X_DroMel_CAF1
Location 8,449,472 – 8,449,564
Length 92
Max. P 0.839608
window5223

overview

Window 3

Location 8,449,472 – 8,449,564
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 77.33
Mean single sequence MFE -31.94
Consensus MFE -18.71
Energy contribution -19.97
Covariance contribution 1.26
Combinations/Pair 1.32
Mean z-score -1.84
Structure conservation index 0.59
SVM decision value 0.75
SVM RNA-class probability 0.839608
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8449472 92 - 22224390
----GGCAGCGGAUCCAACAACACAUCCUACCUGGAGCACGAGCAAAGCAGCUGCGACAGCUCCAAGGCCAGCAGCCAAACGCUGGCCUUUCGACC
----((...((((...................((((((.(((((......))).))...))))))((((((((........)))))))))))).)) ( -31.70)
>DroPse_CAF1 13152 90 - 1
CACAGGCGACGCCUCCGCCGCCACG------CUGGAGCAGGAGCAUACCAGCUGCGAAAGCACCAAAAUGAGCUGCCAGUCGCUGGCCUUCCGUCC
....((((.......))))((((((------(((((((...(((......)))((....))..........))).)))).)).))))......... ( -32.70)
>DroGri_CAF1 69160 96 - 1
CAAUGGCAACGGCAACGGCAACUCCGGCUGCCUGGAGCACGAGCAGAACAGCAGUGACAGCAGUGGUUGUGGCAGCCAAAUGCUCGCUUUUCGUCC
....(((...((((.(((.....)))..)))).((((..((((((.....((.((.(((((....))))).)).))....))))))..))))))). ( -33.50)
>DroSec_CAF1 16965 92 - 1
----GGCAGCGGAUCCAACAACACAUUCUACCUGGAGCACGAGCAAAGCAGCUGCGACAGCUCCAAGGCCAGCAGCCAAACGCUGGCCUUUCGACC
----((...((((...................((((((.(((((......))).))...))))))((((((((........)))))))))))).)) ( -31.70)
>DroSim_CAF1 7569 92 - 1
----GGCAGCGGAUCCAACAACACAUCCUACCUGGAGCACGAGCAAAGCAGCUGCGACAGCUCCAAGGCCAGCAGCCAAACGUUGGCCUUUCGACC
----((...((((...................((((((.(((((......))).))...))))))((((((((........)))))))))))).)) ( -29.30)
>DroYak_CAF1 11190 92 - 1
----GGCAGCGGUUCCAACAACACAUCCUGCCUGGAGCACGAACAAAGCAGCUGCGACAGCUCCAAGGCCAGCAGCCAAACGCUGGCCUUUCGACC
----(((((.(((...........)))))))).(((((.........((....))....)))))(((((((((........)))))))))...... ( -32.72)
>consensus
____GGCAGCGGAUCCAACAACACAUCCUACCUGGAGCACGAGCAAAGCAGCUGCGACAGCUCCAAGGCCAGCAGCCAAACGCUGGCCUUUCGACC
....((...(((.....................(((((....(((.......)))....)))))(((((((((........)))))))))))).)) (-18.71 = -19.97 +   1.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:13 2006