| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,447,490 – 8,447,581 |
| Length | 91 |
| Max. P | 0.521220 |
| Location | 8,447,490 – 8,447,581 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 75.82 |
| Mean single sequence MFE | -31.17 |
| Consensus MFE | -17.97 |
| Energy contribution | -19.43 |
| Covariance contribution | 1.46 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8447490 91 + 22224390 AAAUUGCAAUCCUGCGAGCUUCUGUUGCUCAACUUCUUAAAAACUUUGCGAUCGAGUGGGUGGGAUGCUGGUUGGGGCAGGGGUGACCCUG .....(((.(((..(((((.......))))...............(..(......)..))..)))))).........(((((....))))) ( -29.20) >DroSec_CAF1 14999 91 + 1 AUAUUGCAAUCCGGCGAGCUUCUGUUGCUCAGCUUCUUAAAAACUUUGCGAUCGAGUGGGUGGGGUGCUGGGUAGGACAGGGGUGACCCUG ........(((((((((((.......)))).(((((......((((.......))))....))))))))))))....(((((....))))) ( -32.30) >DroEre_CAF1 10502 89 + 1 AAAUUUUAAUUGUGGGAGCUGGUGUCGCCGAAGCUCCUAGCAAUUCUACCAUUGAGUGGAA-GGAUGCUGGGUG-GGCAGGGAUAACCCUG .......(((((((((((((((.....))..)))))))).)))))...(((((.((((...-...)))).))))-).(((((....))))) ( -32.00) >consensus AAAUUGCAAUCCUGCGAGCUUCUGUUGCUCAACUUCUUAAAAACUUUGCGAUCGAGUGGGUGGGAUGCUGGGUGGGGCAGGGGUGACCCUG ...((((......))))........((((((.(.(((((...((((.......))))...))))).).))))))...(((((....))))) (-17.97 = -19.43 + 1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:12 2006