Locus 3169

Sequence ID X_DroMel_CAF1
Location 8,418,477 – 8,418,585
Length 108
Max. P 0.850039
window5203

overview

Window 3

Location 8,418,477 – 8,418,585
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.58
Mean single sequence MFE -25.90
Consensus MFE -12.67
Energy contribution -13.45
Covariance contribution 0.78
Combinations/Pair 1.15
Mean z-score -2.16
Structure conservation index 0.49
SVM decision value 0.78
SVM RNA-class probability 0.850039
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8418477 108 - 22224390
AAAGUCAAGAAGCGACCGAGCAGAUAAUACAGCUCGGGAAUUAAACAAAUGCGUAUUUUUUUUGUUUGAAAUCAAUAAAUCCAAGUUGGCAC------------GACAAUAAUCAAAAUG
...(((((.......((((((..........))))))...(((((((((...........)))))))))................)))))..------------................ ( -20.50)
>DroSec_CAF1 2647 119 - 1
AAAGUCAAGAAGCAUCCGAGCUGAUAAUACAGCUCGGGAAUUAAACAAAAGCG-UAUUUUUUCGUUUGAAAUUAAUAAAUUCAAUUCGGCACGUGCGCAAAAGCGACAAUAAUCAAAAUG
...(((........(((((((((......)))))))))............(((-(((....(((.(((((.........)))))..)))...))))))......)))............. ( -30.10)
>DroSim_CAF1 400 120 - 1
AAAGUCAAGAAGCAACCGAGCAGAUAAUACAGCUCGGGAAUUAAACAAAAGUAUUGUUUUUUUGUUUGAAAUUAAUAAAUUCAAUUCGGCACGUGCGCAAAAGCGACAAUAAUCAAAAUG
...(((.....(((.((((((..........))))))...(((((((((((.......)))))))))))........................)))((....)))))............. ( -26.40)
>DroEre_CAF1 2048 115 - 1
AGUGUCAUGAAGCAUCUGAACAGAUAAUACGGCUCGGGAAUUGAACAACAGCGUUUGUU-----UUUAAAAUUAAUAAGUCGAAUGUGGCACGUGCGCAAAAGCGACACUAUUAAAAAAG
.(((((((.....((((....))))....(((((.(..((((((((((......)))))-----)....))))..).)))))...)))))))((((((....))).)))........... ( -26.70)
>DroYak_CAF1 411 115 - 1
AGUGUCAUGAAGCAUCCGAACAGAUAAUACGUCUCGGAAAUUGAACAAAAGCGUUUGUU-----UUUCAAAUAAGUAAUCCGAAUGUGGCACGUGCGCAAAAGCGACACUAAUCAAAAAG
.(((((........(((((...(((.....))))))))............(((((((..-----((.(......).))..))))))))))))((((((....))).)))........... ( -25.80)
>consensus
AAAGUCAAGAAGCAUCCGAGCAGAUAAUACAGCUCGGGAAUUAAACAAAAGCGUUUUUUUUU_GUUUGAAAUUAAUAAAUCCAAUUUGGCACGUGCGCAAAAGCGACAAUAAUCAAAAUG
...(((.....((..((((((.(......).))))))...((((((.................))))))...................))....((......)))))............. (-12.67 = -13.45 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:55 2006