Locus 3158

Sequence ID X_DroMel_CAF1
Location 8,398,416 – 8,398,536
Length 120
Max. P 0.935775
window5175

overview

Window 5

Location 8,398,416 – 8,398,536
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.54
Mean single sequence MFE -21.23
Consensus MFE -17.46
Energy contribution -17.27
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -2.35
Structure conservation index 0.82
SVM decision value 1.25
SVM RNA-class probability 0.935775
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8398416 120 + 22224390
ACAAAAACCCUCGAGAUGCCAGUUGCGUCUCUGGUUUUCACUUUAAUCCAAAUAUCUGUAAUAAUAACGAUGUAUUCAUAAUUUUUUUUAAAAACUAAAAAACACACACAAAGUGGCACU
...((((((...(((((((.....))))))).))))))((((((.......(((((.((.......)))))))..........(((((((.....))))))).......))))))..... ( -21.90)
>DroSim_CAF1 717 113 + 1
----AAACCCUCGAGAUGCCAGUUGCGUCUCUGGUUUCCACU-UAAUCCAAAUAUCUGUAAUAAUAACGAUGUAUUCAUAAUUUUUUUUA--AACUAAAAAACACACACAAAGUGACACU
----(((((...(((((((.....))))))).))))).((((-(.......(((((.((.......))))))).........((((((..--....))))))........)))))..... ( -19.00)
>DroEre_CAF1 1153 111 + 1
-----AACCCUCGAGAUGCUAGCUGCGUCUCUGGUUUCCACU-UAAUCCAGAUAUCUGUAAUAAUGAAGAUGUAUUCAUAAUUUUUUUUA---ACUAAAAAACACACACAAAGUGGCACU
-----((((...(((((((.....))))))).)))).(((((-(....(((....))).....(((((......)))))...........---.................)))))).... ( -24.10)
>DroYak_CAF1 707 111 + 1
-----AACCCUCGAGAUGCUGGUUGCAUCUCUGGUUUCCACU-UAAUCCAGAUAUCUGUAAUAAUAACGAUGUAUUCAUAAUUUUUUUUA---ACUAAAAAACACACACAAAGUGACACU
-----((((...(((((((.....))))))).))))..((((-(.......(((((.((.......)))))))........((((((...---...))))))........)))))..... ( -19.90)
>consensus
_____AACCCUCGAGAUGCCAGUUGCGUCUCUGGUUUCCACU_UAAUCCAAAUAUCUGUAAUAAUAACGAUGUAUUCAUAAUUUUUUUUA___ACUAAAAAACACACACAAAGUGACACU
.....((((...(((((((.....))))))).))))..((((.........(((((............)))))..........(((((((.....))))))).........))))..... (-17.46 = -17.27 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:29 2006