Locus 3155

Sequence ID X_DroMel_CAF1
Location 8,383,686 – 8,383,790
Length 104
Max. P 0.522542
window5172

overview

Window 2

Location 8,383,686 – 8,383,790
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.45
Mean single sequence MFE -27.14
Consensus MFE -16.09
Energy contribution -17.13
Covariance contribution 1.04
Combinations/Pair 1.07
Mean z-score -1.63
Structure conservation index 0.59
SVM decision value -0.02
SVM RNA-class probability 0.522542
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8383686 104 - 22224390
CAUAUUAGCCU-UCAAUUUCGAUAGCAACAAC-----GUGUUCCGCCCA-AGGGGCAUCCCCCAAAUUA---------ACGUUUGCCAUCCCGCUUGCACAUAAAUCGAUGGCGAAGGAA
.......((..-((......))..))......-----...((((.....-.((((....))))......---------...(((((((((.................))))))))))))) ( -23.73)
>DroSec_CAF1 12500 104 - 1
CAUAUUAGCCC-CCAAUUUCGAUAGCAACAAC-----GUUUUCCGCCCA-AGGGGCAUCCCCCAAAUUA---------ACGCUUGCCAUCUCGCUUGCACACAAAUCGAUGGCGAAGGAA
.......((((-(.......((.(((......-----))).))......-.))))).............---------....((((((((....(((....)))...))))))))..... ( -22.94)
>DroEre_CAF1 13720 106 - 1
CAUAUUAGCCCCCCAAUUUCGAUAGCAACAAC-----GUUUUCCGCCCAAAGGGGCAUCCCCCAAAUUU---------ACUCUUGCCAUCUCUCUUGCACAUAAAUCGAUGGCGAAGGAA
.......(((((........((.(((......-----))).))........))))).............---------.(..((((((((.................))))))))..).. ( -24.02)
>DroYak_CAF1 12587 103 - 1
CAUAUUAGCCC-CCAAUUUCGAUGGCAAGAGC-----GUUUUCCGCCCA-AGGGGCAUCC-CCAAAUUC---------ACGCUUGCCAUCCCUCUCGCACACAAAUCGAUGGCGCAGGAU
...........-........(((((((((.((-----(.....)))...-.((((...))-))......---------...)))))))))(((..(((.((........))))).))).. ( -29.20)
>DroAna_CAF1 24150 114 - 1
CUUGUUGGCUC-CAAAGGCCAAAGGGAGCCACUGAAUUCUGGCCGCCCA-AGGGGCAUCCCCCAAAAUACAUAUGGAGACUGUAGCUAUCUCCUUUGCACACAAAUCGAUGG----GCAA
((..((((((.-....))))))..)).((((........)))).(((((-.((((....))))......((...(((((.........)))))..))............)))----)).. ( -35.80)
>consensus
CAUAUUAGCCC_CCAAUUUCGAUAGCAACAAC_____GUUUUCCGCCCA_AGGGGCAUCCCCCAAAUUA_________ACGCUUGCCAUCUCGCUUGCACACAAAUCGAUGGCGAAGGAA
.........................................(((((((....))))..........................((((((((.................)))))))).))). (-16.09 = -17.13 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:26 2006