| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 994,950 – 995,042 |
| Length | 92 |
| Max. P | 0.874950 |
| Location | 994,950 – 995,042 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 90.26 |
| Mean single sequence MFE | -24.83 |
| Consensus MFE | -23.41 |
| Energy contribution | -23.41 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.874950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 994950 92 + 22224390 CAGGAGAGCAACACGACCCCGCCCACUUUCCACUUUCCACCUUUCCUUUCCAACCCACCUGAAAAGCUUGAGGGGCGUAGAAGCGUGUUGCU ......(((((((((.(..(((((.(((....((((.((....................)).))))...))))))))..)...))))))))) ( -26.15) >DroSec_CAF1 77506 83 + 1 CAGGAGAGCAACACGACCCCGCCCACUUUCCACC---------CCCUUUCCAACCCACCUGAAAAGCUUGAGGGGCGUAGAAACGUGUUGCU ......(((((((((.(..(((((.(((......---------..((((.((.......)).))))...))))))))..)...))))))))) ( -24.30) >DroSim_CAF1 57006 83 + 1 CAGGAGAGCAACACGACCCCGCCCACUUUCCACC---------CCCUUUCCAACCCACCUGAAAACCUUGAGGGGCGUAGAAGCGUGUUGCU ......(((((((((.(..(((((.(((......---------..........................))))))))..)...))))))))) ( -24.05) >consensus CAGGAGAGCAACACGACCCCGCCCACUUUCCACC_________CCCUUUCCAACCCACCUGAAAAGCUUGAGGGGCGUAGAAGCGUGUUGCU ......(((((((((.(..(((((.(((.........................................))))))))..)...))))))))) (-23.41 = -23.41 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:30 2006