Locus 3131

Sequence ID X_DroMel_CAF1
Location 8,347,007 – 8,347,098
Length 91
Max. P 0.858051
window5120

overview

Window 0

Location 8,347,007 – 8,347,098
Length 91
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 62.20
Mean single sequence MFE -23.14
Consensus MFE -9.73
Energy contribution -10.85
Covariance contribution 1.12
Combinations/Pair 1.15
Mean z-score -2.19
Structure conservation index 0.42
SVM decision value 0.82
SVM RNA-class probability 0.858051
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8347007 91 + 22224390
GUUAGCUGAUCUUCAGCUAGUUCCUUUGGCAUCAUAAGGAUAAUCUUGAUCCCAAC-----UUUAUACUGUAAGAUUAUCUUUCAUCUUCGCUA--GA----------------------
.(((((((.....)))))))....((((((.....(((((((((((((........-----.........))))))))))))).......))))--))---------------------- ( -22.03)
>DroSim_CAF1 15358 96 + 1
GUUAGCUGAUCUUCAGCUAGUUCCUUUGGCAUCAUCAGGAUAAGCUUGGUACCAACUUAACUUCAGACUGUAAGAUUAUCUUUCAUCUUCGUUA--GA----------------------
(..((.((((((((((((((((...((((....((((((.....)))))).))))...))))..)).))).))))))).))..)..........--..---------------------- ( -19.40)
>DroYak_CAF1 10058 120 + 1
GCUAGAGUUUCUACAGCUAGUUGCAUUUGCAUUCGCAGGAUAAUCCUGAUCUUAAGUUUACUUUAGAGCGUGAGAUCAUCUUCCAUCUAAUCCAACUCUAUUUGAGAUCCUCUUCCAUUU
(..((((..(((.(((..(((((.((((((....)))(((......((((((((.((((......)))).))))))))...)))....))).)))))....))))))..))))..).... ( -28.00)
>consensus
GUUAGCUGAUCUUCAGCUAGUUCCUUUGGCAUCAUCAGGAUAAUCUUGAUCCCAACUU_ACUUUAGACUGUAAGAUUAUCUUUCAUCUUCGCUA__GA______________________
.((((((((...))))))))................((((((((((((......................))))))))))))...................................... ( -9.73 = -10.85 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:41 2006