Locus 3130

Sequence ID	X_DroMel_CAF1
Location	8,343,373 – 8,343,466
Length	93
Max. P	0.900729

overview

Window 9

Location	8,343,373 – 8,343,466
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	92.35
Mean single sequence MFE	-26.44
Consensus MFE	-21.94
Energy contribution	-22.54
Covariance contribution	0.60
Combinations/Pair	1.00
Mean z-score	-1.70
Structure conservation index	0.83
SVM decision value	1.02
SVM RNA-class probability	0.900729
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8343373 93 - 22224390
ACAACACUCGUAGGCCAAAGAUAAUGACAGUUAUCAAUACUGUACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCGCCUGACCAUGAGUG
....(((((((((((((((((.....(((((.......))))).(((((..((...))..)))))..)))))).....))))....))))))) ( -28.80)
>DroSec_CAF1 8896 93 - 1
ACAACACUCGUAGGCCAAAGAUAAUGGCGGUUAUCAACACUGUACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCGCCUGACCAUGAGUG
....(((((((.((.((........(((((...((((.......(((((..((...))..))))).....))))..))))))).))))))))) ( -28.90)
>DroSim_CAF1 11055 93 - 1
ACAACACUCGUAGGCCAAAGAUAAUGGCGGUUAUCAACACUGUACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCGCCUGACCAUGAGUG
....(((((((.((.((........(((((...((((.......(((((..((...))..))))).....))))..))))))).))))))))) ( -28.90)
>DroEre_CAF1 5799 88 - 1
ACAACACUCGUAGGCCAAAGAUAAUCGCAGUUAUCAA-----GACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCGCCUGACCAUGAGUG
....(((((((((((...........((((((.....-----))))))..((((((...(((....)))..)))).))))))....))))))) ( -25.00)
>DroYak_CAF1 6372 91 - 1
ACAACAAACGUAGGCCAACGAUAAUCGCAGUUAUCAGGA--GGACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCACCUGACCAUGAGUG
....((..(((.((.(...((((((....))))))(((.--((((((((..((...))..)))))(((....)))))).)))).)))))..)) ( -20.60)
>consensus
ACAACACUCGUAGGCCAAAGAUAAUGGCAGUUAUCAACACUGUACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCGCCUGACCAUGAGUG
....(((((((((((....((((((....)))))).........(((((..((...))..))))).............))))....))))))) (-21.94 = -22.54 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:40 2006