Locus 3121

Sequence ID X_DroMel_CAF1
Location 8,327,492 – 8,327,582
Length 90
Max. P 0.945526
window5102

overview

Window 2

Location 8,327,492 – 8,327,582
Length 90
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 59.65
Mean single sequence MFE -44.90
Consensus MFE -18.55
Energy contribution -19.95
Covariance contribution 1.40
Combinations/Pair 1.69
Mean z-score -2.04
Structure conservation index 0.41
SVM decision value 1.35
SVM RNA-class probability 0.945526
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8327492 90 + 22224390
GGUGCUGAUGCCGCUUCAGCGGCCGCAGCAGCUGCCGGCGGUGCCGGUGG---------AGCUGGUGGCGAGU------ACGGUGGUGCUAACGCCGGUGCUGGU
(.(((((..(((((....)))))..))))).).(((((((.((((((...---------..)))))(((((((------((....)))))..))))).))))))) ( -47.20)
>DroPse_CAF1 85 84 + 1
GGCGCCGAUG------CAUCGGCCGGAGCAUCUGCUGGCGGUGCCGCCAG---------CAGUGGCGGCGAGU------ACACCAUUAGCAAUGGCGGAUCUGGA
(.((((((((------(..(....)..)))))((((((((....))))))---------))..)))).)((..------.(.((((.....)))).)..)).... ( -38.60)
>DroGri_CAF1 106 87 + 1
---------GGCGAUGCAGCAGCCGCUGCAUCCGCUGGCGGUGCUGGUGAUUUCGGCAAUGCUGGUGGUUUGG------GCGAUGGUUCA---GCCGCCGCUUCC
---------(((((((((((....))))))))(((..(((.((((((.....)))))).)))..))).....(------((((....)).---))))))...... ( -42.70)
>DroEre_CAF1 73 78 + 1
GGUGCUGAAGC------------CGCAGCUGCUGCCGGCGGUGCCGGCGG---------AGCUGGUGGCGAGU------UCGGUGGUGCUGGCGCCGGUGCUGGU
...((((((((------------(((((((.((((((((...))))))))---------)))).)))))...)------)))))((..(((....)))..))... ( -42.90)
>DroWil_CAF1 70 93 + 1
GGCGCCGAUGCCGCUUCGGCAGCUGCCGCUGCUGCUGGCCA---AGGUGG---------UCAGGGUGGCGAGUAUGGACAUGGUGGUGCUGGUGCCGGCGCCGGC
(((((((..(((((....)).((..((((..((.((((((.---....))---------))))))..))..((....))..))..))...)))..)))))))... ( -51.30)
>DroYak_CAF1 73 90 + 1
GGCGCUGAUGCCGCCUCAGCGGCCGCGGCUGCUGCCGGUGGUGCCGGUGG---------AGCUGGUGGCGAGU------AUGGUGGUGCCAAUGCCGGUGCUGGU
((((.((..((((((...((.(((((((((.(..((((.....))))..)---------)))).)))))..))------..))))))..)).))))......... ( -46.70)
>consensus
GGCGCUGAUGCCGCUUCAGCGGCCGCAGCAGCUGCCGGCGGUGCCGGUGG_________AGCUGGUGGCGAGU______ACGGUGGUGCUAAUGCCGGUGCUGGU
((((((...............((((((((..((((((((...))))))))..........))).)))))...............((((....))))))))))... (-18.55 = -19.95 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:25 2006