| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,312,194 – 8,312,301 |
| Length | 107 |
| Max. P | 0.597046 |
| Location | 8,312,194 – 8,312,301 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.94 |
| Mean single sequence MFE | -19.47 |
| Consensus MFE | -10.80 |
| Energy contribution | -10.92 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8312194 107 + 22224390 CUCCAUUUA----UAAUUCCUGAUUGCUUUUUACAAUAUUUCAUUUGUAAU-UUGAUUAGGAAAGCUUUAGCAACAUUUUGAGCAACUUAUGGCUUUUUAAAUUACUUUUCU------ ..((((...----...((((((((((....((((((........)))))).-.)))))))))).((((............)))).....))))...................------ ( -17.90) >DroSim_CAF1 5705 113 + 1 CUCCAUUUACAUAUAAUUCCUGAUUGUUUUUUAAAAUAUUUCAU----AGG-UUGAUUAGGAAAGCUUUAGCAACAUUUUGAGCAACUUAUGGCUUUGAAAAAUACUUUUCUAUAUGU ........(((((((......((.(((((((((((.....((((----(((-(((.((((((..((....))....)))))).)))))))))).))))))))))).))...))))))) ( -21.80) >DroEre_CAF1 3782 101 + 1 CUCCAUUUC----GAAUUCCUGAUUGCCUUUUACAUUAUUUCUU----AUUUCUGAUUGGGAAAGCU-UAGCAACAUUUUGAGCAACUUAUGGCAAUGAA--------UUUUAUAUUU .........----((((((...((((((..........((((((----(........)))))))(((-(((.......)))))).......)))))))))--------)))....... ( -18.70) >consensus CUCCAUUUA____UAAUUCCUGAUUGCUUUUUACAAUAUUUCAU____AAU_UUGAUUAGGAAAGCUUUAGCAACAUUUUGAGCAACUUAUGGCUUUGAAAA_UACUUUUCUAUAU_U ..((((..........(((((((((.............................))))))))).((((............)))).....))))......................... (-10.80 = -10.92 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:21 2006