Locus 3114

Sequence ID X_DroMel_CAF1
Location 8,307,837 – 8,307,928
Length 91
Max. P 0.540995
window5094

overview

Window 4

Location 8,307,837 – 8,307,928
Length 91
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.19
Mean single sequence MFE -34.42
Consensus MFE -21.19
Energy contribution -21.38
Covariance contribution 0.20
Combinations/Pair 1.25
Mean z-score -1.38
Structure conservation index 0.62
SVM decision value 0.01
SVM RNA-class probability 0.540995
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8307837 91 - 22224390
GAGAAAGCCUCUCCGGGUCGCGGUGAUGGUGAACGCAACAAAUCGAAGCCGCGUACCUUCGGAGUAGCUGUGGCACCACCA------GCCCCA------UUUU--
.....(((..((((((((((((((..((((...........))))..)))))).)))..)))))..)))(.(((.......------))).).------....-- ( -32.60)
>DroVir_CAF1 942 99 - 1
GAAAAUGCCUGGCCGGGACGCGGCGAUGGUGAGCGCAGCAAAUCGAAACCCCGAAUGCGUGGCGUUCCCGUGCUGGCCUCU------UCACCAGUUGCAUUUGCA
(.((((((((((..((((.(((((.((((.((((((.(((..(((......))).)))...))))))))))))).)).)))------)..))))..)))))).). ( -39.40)
>DroSec_CAF1 1027 91 - 1
GAGAAAGCCUCUCCGGGUCGCGGUGAUGGUGAGCGCAACAAAUCGAAGCCGCGUACCUUCGGAGUGGCUGUGGCACCAUCU------GCCCCA------UUUU--
.....((((.((((((((((((((..((((...........))))..)))))).)))..))))).))))(.((((.....)------))).).------....-- ( -37.10)
>DroSim_CAF1 1035 91 - 1
GAGAAAGCCUCUCCGGGUCGCGGUGAUGGUGAGCGCAACAAAUCGAAGCCGCGUACCUUCGGAGUGGCUGUGGCACCAUCU------GCCCCA------UUUU--
.....((((.((((((((((((((..((((...........))))..)))))).)))..))))).))))(.((((.....)------))).).------....-- ( -37.10)
>DroEre_CAF1 1177 91 - 1
GAGAAAGCUUCUCCGGGUCGCGGUGAUGGUGAGCGCAGUAAAUCAAAUCCGCGUAUUCUUGGAGUCGCUUUGGCUUGACCG------ACACCA------UUUU--
(..(((((..(((((((.(((((...((((..((...))..))))...)))))....)))))))..)))))..).......------......------....-- ( -27.50)
>DroYak_CAF1 1031 97 - 1
GAGAAAGCCUCUCCGGGUCGCGGUGAUGGUGAGCGCAACAAAUCGAAACCGCGUAUUCUCGGAGUGGCUGUGCCUUCACCAGUUGUUACACCA------UUUU--
(((..((((.(((((((.((((((..((((...........))))..))))))....))))))).)))).....)))................------....-- ( -32.80)
>consensus
GAGAAAGCCUCUCCGGGUCGCGGUGAUGGUGAGCGCAACAAAUCGAAGCCGCGUACCCUCGGAGUGGCUGUGGCACCACCU______GCACCA______UUUU__
.....(((..(((((((.((((((..((((...........))))..))))))....)))))))..))).................................... (-21.19 = -21.38 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:18 2006