Locus 3112

Sequence ID X_DroMel_CAF1
Location 8,298,629 – 8,298,721
Length 92
Max. P 0.997349
window5092

overview

Window 2

Location 8,298,629 – 8,298,721
Length 92
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 78.88
Mean single sequence MFE -27.46
Consensus MFE -15.02
Energy contribution -15.44
Covariance contribution 0.42
Combinations/Pair 1.27
Mean z-score -3.07
Structure conservation index 0.55
SVM decision value 2.84
SVM RNA-class probability 0.997349
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8298629 92 + 22224390
ACUUGA-AAUCUCGGGGAUCCGGGAAUUCUGAGCUAAUUGAUCGGGUUUUCUGGUUUUCUGAUCUUUUGGUUUUCCGAUUCUCUGGUUUUCAG
...(((-((.(.((((((..((((((......(((((..(((((((...........)))))))..)))))))))))..))))))).))))). ( -29.90)
>DroSec_CAF1 4946 84 + 1
ACUUGA-AAUCUCGGGGAUCCGGGAAUUCUGACCUAAUUGAUCGGGUUUUCUGG--------UCUUUUGGUUUUCCGAUUCUCUGGUUCUCAG
......-......(((((((.(((((((..((((.((..((((((.....))))--------))..))))))....))))))).))))))).. ( -26.80)
>DroSim_CAF1 5654 84 + 1
ACUUGA-AAUCUCGGGGAUCCGGGAAUUCUGAGCUAAUUGAUCGGGUUUUCUGG--------UCUUUUGGUUUUCCGAUUCUCUGGUUUUCAG
...(((-((.(.((((((..((((((......(((((..((((((.....))))--------))..)))))))))))..))))))).))))). ( -28.90)
>DroEre_CAF1 5051 84 + 1
ACUUGA-AAUCUCGGGGAUCCGGGAAUUCUGAGCUAAUUGAUCGGAUAUUCUGG--------UUUUCUGGUUCUCUGGUUUUCGGUUUCUCAG
......-......(((((.(((..((((..((((((...((((((.....))))--------))...))))))...))))..))).))))).. ( -27.20)
>DroAna_CAF1 6633 72 + 1
ACUUGAGAAUCUCGG--AGCCGGGAAUUCGGAGCUAAUUGCUCUGGUUU--CGG--------UUCGCU---------CCUCUCUGUUAUUCGG
....((((......(--(((((..(..(((((((.....))))))))..--)))--------)))...---------..)))).......... ( -24.50)
>consensus
ACUUGA_AAUCUCGGGGAUCCGGGAAUUCUGAGCUAAUUGAUCGGGUUUUCUGG________UCUUUUGGUUUUCCGAUUCUCUGGUUUUCAG
...(((......((((((.(((((((.(((((.(.....).))))).)))))))............((((....)))).))))))....))). (-15.02 = -15.44 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:16 2006