Locus 3102

Sequence ID X_DroMel_CAF1
Location 8,277,466 – 8,277,576
Length 110
Max. P 0.612041
window5073

overview

Window 3

Location 8,277,466 – 8,277,576
Length 110
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 95.22
Mean single sequence MFE -33.73
Consensus MFE -32.05
Energy contribution -32.05
Covariance contribution 0.00
Combinations/Pair 1.03
Mean z-score -1.44
Structure conservation index 0.95
SVM decision value 0.16
SVM RNA-class probability 0.612041
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8277466 110 - 22224390
AU-GGAGAUAAUGGUGGAUUUUCGAGGGCUAGCACAUUUUGGUAAGGUAAUUUCAUCUUGCUUUUCGUACUUGGAUGCGGUACCUUGAAGGUCCGCUCUGGCCUGACUUGA---
..-((.......((((((((((((((((((.(((......((((((((......)))))))).((((....)))))))))).)))))))))))))))....))........--- ( -33.70)
>DroSec_CAF1 3831 109 - 1
AU-GGAGAUAAUGGCGGAUUUUCGAGGGCUAGCACGUUUUGGUAAGGUAAUUUCAUCUUGCUUUUCGUA-UUGGAUGCGGUACCUUGAAGGUCCGCUCUGGCCUGACUUGA---
..-((.......(((((((((((((((.((((.(((....((((((((......))))))))...))).-))))........)))))))))))))))....))........--- ( -36.10)
>DroSim_CAF1 14919 109 - 1
AU-GGAGAUAAUGGCGGAUUUUCGAGGGCUAGCACGUUUUGGUAAGGUAAUUUCAUCUUGCUUUUCGUA-UUGGACGCGGUACCUUGAAGGUCCGCUCUGGCCUGACUUGA---
..-((.......(((((((((((((((.((((.(((....((((((((......))))))))...))).-))))........)))))))))))))))....))........--- ( -36.10)
>DroYak_CAF1 15130 113 - 1
AUUGCAGAUAAUGGUGGAUUUUCGAGGGCUAGCACAUUUUGGUAAGGUAAUUUCAUCUUGCUUUUCGUA-UUGGAUGCGGUACCUUUAAGGUCCGCUCUGGCCUGACUUGACUU
.(..(........)..)....(((((((((((........((((((((......)))))))).......-......((((.(((.....))))))).))))))...)))))... ( -29.00)
>consensus
AU_GGAGAUAAUGGCGGAUUUUCGAGGGCUAGCACAUUUUGGUAAGGUAAUUUCAUCUUGCUUUUCGUA_UUGGAUGCGGUACCUUGAAGGUCCGCUCUGGCCUGACUUGA___
............((((((((((((((((((.((.......((((((((......)))))))).((((....)))).))))).)))))))))))))))................. (-32.05 = -32.05 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:59 2006