| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 985,697 – 985,831 |
| Length | 134 |
| Max. P | 0.928452 |
| Location | 985,697 – 985,791 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 83.75 |
| Mean single sequence MFE | -15.10 |
| Consensus MFE | -11.35 |
| Energy contribution | -12.10 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 985697 94 + 22224390 CUAUACACAUCCCCUUAAAACACAAAGUAGUUUUAAUGCUUAAAUUUACUUCCUCAUUGAGGACACACACUUGCCUUCCCACUGGCAGGAUACA ............((((((......((((((.((((.....)))).)))))).....)))))).......((((((........))))))..... ( -18.20) >DroSec_CAF1 68366 78 + 1 AUAUACACAUCCCCUUA-AGCACAAAGUAGUUUUAAUGCUUCAAUUUACUUCCUCAUUGAGGACA----CUUU-----------ACAGGAUACA ........((((....(-((((..(((....)))..))))).........(((((...)))))..----....-----------...))))... ( -11.20) >DroSim_CAF1 47632 89 + 1 CUAUACACAUCCCCUUA-AACACAAAGUAGUUUUAAUGCUUCAAUUUACAUCCUCAUUGAGGACA----CUUGCCUUCCUACUGGCAGGAUACA .................-......(((((.......))))).........(((((...)))))..----((((((........))))))..... ( -15.90) >consensus CUAUACACAUCCCCUUA_AACACAAAGUAGUUUUAAUGCUUCAAUUUACUUCCUCAUUGAGGACA____CUUGCCUUCC_ACUGGCAGGAUACA ........................(((((.......))))).........(((((...)))))......((((((........))))))..... (-11.35 = -12.10 + 0.75)
| Location | 985,712 – 985,831 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.42 |
| Mean single sequence MFE | -25.32 |
| Consensus MFE | -10.18 |
| Energy contribution | -10.47 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 985712 119 + 22224390 -UAAAACACAAAGUAGUUUUAAUGCUUAAAUUUACUUCCUCAUUGAGGACACACACUUGCCUUCCCACUGGCAGGAUACAACCACCGCAUCUUUGAACCACCAGUGAGGUGUAACCAACU -((((((........))))))..........((((..((((((((.((.......((((((........))))))............((....))..))..)))))))).))))...... ( -26.30) >DroSec_CAF1 68381 103 + 1 -UA-AGCACAAAGUAGUUUUAAUGCUUCAAUUUACUUCCUCAUUGAGGACA----CUUU-----------ACAGGAUACAAACACCGCAUCUUUGGACCACCAGUGAGUUGUAACCAACU -.(-((((..(((....)))..)))))((((((((((((((...)))))..----....-----------...((...((((.........))))..))...)))))))))......... ( -16.80) >DroSim_CAF1 47647 114 + 1 -UA-AACACAAAGUAGUUUUAAUGCUUCAAUUUACAUCCUCAUUGAGGACA----CUUGCCUUCCUACUGGCAGGAUACAACCACCGCAUCUUUGGACCACCAGUGAGUUGUAACCAACU -..-..(((...((.((((..((((...........(((((...)))))..----((((((........))))))...........))))....)))).))..)))(((((....))))) ( -25.40) >DroEre_CAF1 81812 106 + 1 AUA-AAUGCAAACACAUCCUUAUGCUUAAAUGUACAACCCCAUUGAAGGGA----GUUGCCUUCCCACAGGCAGGAUGCAACCA------CUGUAAG---UGAGUGAGUUGCAACCAACU ...-..(((.............(((......)))(((((((......))).----))))...........)))((.((((((((------((.....---..)))).)))))).)).... ( -27.40) >DroYak_CAF1 74049 110 + 1 AUA-AAUGCAAA--CAUCCUUAUGCUUGAAUUUGCAUCCCCUUUAAAGGGA----GUUGCCUUUCCACUGGCAGGAUACAACCACAUCAUCUGUGAG---UGAGUGGAUUGUGACCAACU ...-.(((((((--((..(....)..))..))))))).((((....))))(----((((((........))).((.(((((((((.((((......)---))))))).))))).)))))) ( -30.70) >consensus _UA_AACACAAAGUAGUUUUAAUGCUUAAAUUUACAUCCUCAUUGAGGACA____CUUGCCUUCCCACUGGCAGGAUACAACCACCGCAUCUUUGAACCACCAGUGAGUUGUAACCAACU .......................................((......))........((((........))))((.(((((((((..................))).)))))).)).... (-10.18 = -10.47 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:25 2006