Locus 3092

Sequence ID X_DroMel_CAF1
Location 8,257,692 – 8,257,792
Length 100
Max. P 0.986186
window5054 window5055

overview

Window 4

Location 8,257,692 – 8,257,792
Length 100
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 92.05
Mean single sequence MFE -29.77
Consensus MFE -27.33
Energy contribution -26.23
Covariance contribution -1.10
Combinations/Pair 1.21
Mean z-score -3.67
Structure conservation index 0.92
SVM decision value 2.03
SVM RNA-class probability 0.986186
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8257692 100 + 22224390
U-UUCAGCAUGCUUACUCACGCACACACUUGUGCGCUUUAAACGCUUACGGUUCUGUGUGUGCGUGUAUGUAAAUGUCUAAUACUUGUGUCAAUUUUCCCU
.-....((((..((((.((((((((((((((((.((.......)).)))))....)))))))))))...))))))))........................ ( -26.70)
>DroSec_CAF1 7972 101 + 1
UUUUCAGCAUGCUCACUCACGCACACACUUGUACGCUUUAAACGCUUGCGGUUCUGUGUGUGCGUGUAUGUAAAUGUCUAAUACUUAUGUCAAUUUUCCCU
......((((...((..(((((((((((.....(((...........))).....)))))))))))..))...))))........................ ( -29.40)
>DroYak_CAF1 12605 98 + 1
U-UUCAGCAUGCUCACUCACGCACACAUUUGUACGCUUUAAACGCGUGCGGUU--GUGUGUGUGUGUAUGUAAAUGUCUAAUACUUGUGUCAAUUUUUCCA
.-....((((((.....((((((((((.((((((((.......)))))))).)--))))))))).)))))).............................. ( -33.20)
>consensus
U_UUCAGCAUGCUCACUCACGCACACACUUGUACGCUUUAAACGCUUGCGGUUCUGUGUGUGCGUGUAUGUAAAUGUCUAAUACUUGUGUCAAUUUUCCCU
......((((...((..((((((((((((((((.((.......)).)))))....)))))))))))..))...))))........................ (-27.33 = -26.23 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 8,257,692 – 8,257,792
Length 100
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 92.05
Mean single sequence MFE -26.23
Consensus MFE -23.32
Energy contribution -24.10
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -2.61
Structure conservation index 0.89
SVM decision value 1.23
SVM RNA-class probability 0.934175
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8257692 100 - 22224390
AGGGAAAAUUGACACAAGUAUUAGACAUUUACAUACACGCACACACAGAACCGUAAGCGUUUAAAGCGCACAAGUGUGUGCGUGAGUAAGCAUGCUGAA-A
....................((((.(((((((...(((((((((((.(...)....((((.....))))....))))))))))).))))..))))))).-. ( -27.40)
>DroSec_CAF1 7972 101 - 1
AGGGAAAAUUGACAUAAGUAUUAGACAUUUACAUACACGCACACACAGAACCGCAAGCGUUUAAAGCGUACAAGUGUGUGCGUGAGUGAGCAUGCUGAAAA
....................((((.(((...(((.(((((((((((.(((((....).))))...(....)..))))))))))).)))...)))))))... ( -29.20)
>DroYak_CAF1 12605 98 - 1
UGGAAAAAUUGACACAAGUAUUAGACAUUUACAUACACACACACAC--AACCGCACGCGUUUAAAGCGUACAAAUGUGUGCGUGAGUGAGCAUGCUGAA-A
....................((((.(((...(((.(((.((((((.--....(.((((.......)))).)...)))))).))).)))...))))))).-. ( -22.10)
>consensus
AGGGAAAAUUGACACAAGUAUUAGACAUUUACAUACACGCACACACAGAACCGCAAGCGUUUAAAGCGUACAAGUGUGUGCGUGAGUGAGCAUGCUGAA_A
....................((((.(((.(.(((.(((((((((((.....(((...........))).....))))))))))).))).).)))))))... (-23.32 = -24.10 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:44 2006