Locus 3091

Sequence ID X_DroMel_CAF1
Location 8,256,615 – 8,256,721
Length 106
Max. P 0.950917
window5053

overview

Window 3

Location 8,256,615 – 8,256,721
Length 106
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 73.46
Mean single sequence MFE -25.50
Consensus MFE -14.99
Energy contribution -15.30
Covariance contribution 0.31
Combinations/Pair 1.16
Mean z-score -1.97
Structure conservation index 0.59
SVM decision value 1.41
SVM RNA-class probability 0.950917
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8256615 106 - 22224390
AAUUCGAUGCGAAAGGAUAAAGAUUUGCCGCUGGGGCAGCGAAAAAGAGAGAAAAAACACAGUGG---GCAAGUGGUGCACUUUCCAUAGAAGAGUGUUCCAAUGUGCC
..((((((.(....).))......(((((.....))))))))).....................(---(((..(((.(((((((.......))))))).)))...)))) ( -27.60)
>DroSec_CAF1 6948 109 - 1
AAUUUGAUGCGAAAGGAUAAAGAUUUGCCGCUGGGGCAGCGAAAAAGAGAGAAAAAACACAUUGGGCGGCAAGUGGUGCACUUUCCAUAGAAAAGUGCUCCAAUGUGCC
..((..((((....)........(((((.((....)).)))))................)))..)).((((..(((.(((((((.......))))))).)))...)))) ( -30.30)
>DroYak_CAF1 11564 83 - 1
CAUUUGAUUCGAAAGGAUU--------------------CGAAAAAUGGAGAA-AAACACAGUGG---GCAAAAGAAGCACUUUUCAUAGAAGAGUAUUUCCAU--GCC
..((((((((....))).)--------------------))))..(((((((.-...........---((.......))(((((((...))))))).)))))))--... ( -18.60)
>consensus
AAUUUGAUGCGAAAGGAUAAAGAUUUGCCGCUGGGGCAGCGAAAAAGAGAGAAAAAACACAGUGG___GCAAGUGGUGCACUUUCCAUAGAAGAGUGUUCCAAUGUGCC
..((((((.(....).))......(((((.....))))))))).........................(((..(((.(((((((.......))))))).)))...))). (-14.99 = -15.30 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:42 2006