Locus 3089

Sequence ID X_DroMel_CAF1
Location 8,243,237 – 8,243,357
Length 120
Max. P 0.769983
window5051

overview

Window 1

Location 8,243,237 – 8,243,357
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.42
Mean single sequence MFE -21.14
Consensus MFE -4.58
Energy contribution -7.54
Covariance contribution 2.96
Combinations/Pair 1.10
Mean z-score -1.75
Structure conservation index 0.22
SVM decision value 0.53
SVM RNA-class probability 0.769983
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8243237 120 + 22224390
AGGAAAUCCCCUUUAUAAAAUGGAUAUUGUAUGCACUGGGAUAAGAUAUAUAUUAUAUGGUAAUAUUAUAUUAUAUCCCAAAUUUUGUGGAACAUCAAAUGAAUUGACCAUGACUUCCGG
.((((.((...(((((((((((.(((...))).)..(((((((.((((((((((((...)))))).)))))).))))))).))))))))))...((((.....))))....)).)))).. ( -25.40)
>DroSec_CAF1 144385 102 + 1
-----AUCCCCUUUAUAAUGUGGAUAUUGUUUGUACUGGGAUACCAUAUCC--------GCA-----AUAUUAUAUCCCACAUUCUGUGGAUCAUCACAUAAAUUGUCCAUGACUUCCCA
-----..............(((((((..((((((..(((((((..((((..--------...-----))))..)))))))......(((......))))))))))))))))......... ( -20.70)
>DroSim_CAF1 108201 100 + 1
AGGAAAUCCCCUUUAUAUCCGCAAUAUUUUAUAUCCU-------UAUAUCA--------GCA-----AUAUUAUAUCCCAAACUCUGUGGAUCAUCAAAUAAAUUGUCCAUGACUUCCCA
.((((.((..............((((((.((((....-------))))...--------..)-----)))))..............((((((.((.......)).)))))))).)))).. (  -9.50)
>DroEre_CAF1 133562 107 + 1
AGGAAAUCGCCUCUAGAAAGGGGAAAGUGUAUGCACUGCGAUACCAUAUCC--------GCA-----AUAUUACAUCCCAAGUAUUGGGGAUCAUCAAAUAUAUUGACCAUGACUUUCGA
.(((((((((((((....))))...((((....)))))))))..(((((((--------.((-----(((((........))))))).))))..((((.....))))..)))..)))).. ( -24.60)
>DroYak_CAF1 134618 107 + 1
AGGUAAUCACCUCUAUAAAGUGGAUAUUGUAUGCACUGCGAUACCAUAUCC--------GCA-----AUAUUAUCUCCCAAGUAUUGUGGAUCAUCAAAUAUAUUGACCAUGACUUCCGA
.((...(((..((.(((..((((.(((((((.....)))))))))))((((--------(((-----(((((........)))))))))))).........))).))...)))...)).. ( -25.50)
>consensus
AGGAAAUCCCCUUUAUAAAGUGGAUAUUGUAUGCACUGCGAUACCAUAUCC________GCA_____AUAUUAUAUCCCAAAUUUUGUGGAUCAUCAAAUAAAUUGACCAUGACUUCCGA
.((((.((.............((((((.((((........)))).))))))........................(((((.....)).)))....................)).)))).. ( -4.58 =  -7.54 +   2.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:40 2006