| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,181,027 – 8,181,121 |
| Length | 94 |
| Max. P | 0.817517 |
| Location | 8,181,027 – 8,181,121 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 72.78 |
| Mean single sequence MFE | -20.93 |
| Consensus MFE | -12.57 |
| Energy contribution | -12.02 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8181027 94 - 22224390 --CCUC-AAGUGCAUAUCAAAUGGCCAUGGCAUUAAGCCAUUAAUGUCAGCCU----------CAAGUUGCUAAAAGUCUGUUAAAGCCAGCCAUUGCAAUGAUAAC --....-.......((((....(((..(((((((((....)))))))))))).----------...(((((.....(.(((.......))))....))))))))).. ( -20.00) >DroPse_CAF1 86767 99 - 1 GGCAUC-AAGUGGGUAUCCAAUGGCCCUGGCAUUAAGCCAUUAAUGUCAGUUUGCCGCUCGAACAUGCUGCGAAAAGUGCUUUAAAGUA------UUCAAGGAAAA- ....((-...(((((((.....(((.((((((((((....))))))))))(((((.((........)).)))))....))).....)))------))))..))...- ( -26.70) >DroSec_CAF1 84230 75 - 1 --CCUC-AAGUGCAUAGCAAAUGGCCAUGGCAUUAAGCCAUUAAUGUCAGCCU----------CAAGUUGCUAAAAGUCUGUUAAAGC------------------- --....-.......((((((..(((..(((((((((....)))))))))))).----------....))))))...............------------------- ( -19.10) >DroSim_CAF1 66981 76 - 1 --CCUCUAAGUGCAUAGCAAAUGGCCAUGGCAUUAAGCCAUUAAUGUCAGCCU----------CAAGUUGCUAAAAGUCUGUUAAAGC------------------- --............((((((..(((..(((((((((....)))))))))))).----------....))))))...............------------------- ( -19.10) >DroEre_CAF1 74330 78 - 1 --CCUG-AAGUGUGUAUCAAAUGGCCGUGGCAUUAAGCCAUUAAUGCCAGCCU----------CAAGUUGCUAAAAGUC----------------UUCAAUGAUUAC --..((-(((....((.(((..(((..(((((((((....)))))))))))).----------....))).)).....)----------------))))........ ( -20.70) >DroYak_CAF1 72150 94 - 1 --CCUG-AAGUGCGUAUCAAAUGGCCGUGGCAUUAGGCCAUUAAUGUCAGCCU----------CAAGUUGCUAAAAGUCUGUUAAAGCCAGUCAUUUCAAUGAUUAC --..((-(((((((((......(((..(((((((((....)))))))))))).----------.....))).....(.((.....)).).).)))))))........ ( -20.00) >consensus __CCUC_AAGUGCAUAUCAAAUGGCCAUGGCAUUAAGCCAUUAAUGUCAGCCU__________CAAGUUGCUAAAAGUCUGUUAAAGC_______UUCAAUGAU_A_ ......................(((..(((((((((....))))))))))))....................................................... (-12.57 = -12.02 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:01 2006