Locus 3051

Sequence ID X_DroMel_CAF1
Location 8,168,725 – 8,168,816
Length 91
Max. P 0.991574
window4992

overview

Window 2

Location 8,168,725 – 8,168,816
Length 91
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 72.80
Mean single sequence MFE -22.00
Consensus MFE -10.90
Energy contribution -11.93
Covariance contribution 1.03
Combinations/Pair 1.12
Mean z-score -2.49
Structure conservation index 0.50
SVM decision value 2.28
SVM RNA-class probability 0.991574
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8168725 91 - 22224390
-----------UGAGUGAAAGUGCUGGCGAAAUUAUUGACGACUGCAUUUUCGGGCUGUAAAUCAAGCAAAAGUGAAAAA---AAGUAAAAAAAAAAAUUGGAAU
-----------....(((((((((...((..........))...))))))))).(((........)))............---...................... ( -13.40)
>DroPse_CAF1 73746 85 - 1
-----------GGAGAGAAAGUGCUGGGAAAAUUAUUGCAGACUGCAUCUCUGCGCUGUAAAUCAAGCGAAAGUGAAAACCUCCAGCAAAAA-AAAA--------
-----------(.(((((.(((.(((.((......)).))))))...))))).)((((........((....)).........)))).....-....-------- ( -21.53)
>DroSec_CAF1 72088 90 - 1
--------CUCUGAGUGAAAGUGCUGGCGAAAUUAUUGCCGCCUGCAUUUUCGGGCUGUAAAUCAAGCGAAAGUGGAAA----UAGUACAAAAAA---GUGGAAU
--------.(((....((((((((.((((..........)))).))))))))(..((((...((..((....)).)).)----)))..)......---..))).. ( -24.10)
>DroSim_CAF1 54123 92 - 1
--------UUCUGAGUGAAAGUGCUGGCGAAAUUAUUGCCGCCUGCAUUUUCGGGCUGUAAAUCAAGCGAAAGUGAAAA----AAGUACAAAAAA-ACGAGGAAU
--------((((..((((((((((.((((..........)))).))))))))....((((......((....)).....----...)))).....-))..)))). ( -25.74)
>DroYak_CAF1 59648 91 - 1
UGAAAGUGCACCGAGUGAAAGUGCUGGCAAAAUUAUUGCCGACUGCAUUUUCGGGCUGUAAGUCAAGCGAAAGUACAAA-------------AAC-CGAAAGAAC
(((...((((((...(((((((((((((((.....))))))...))))))))))).))))..))).((....)).....-------------...-(....)... ( -25.70)
>DroPer_CAF1 73649 86 - 1
-----------GGAGAGAAAGUGCUGGGAAAAUUAUUGCAGACUGCAUCUCUGCGCUGUAAAUCAAGCGAAAGUGAAAACCUCCAGCAAAAAAAAAA--------
-----------(.(((((.(((.(((.((......)).))))))...))))).)((((........((....)).........))))..........-------- ( -21.53)
>consensus
___________UGAGUGAAAGUGCUGGCAAAAUUAUUGCCGACUGCAUUUUCGGGCUGUAAAUCAAGCGAAAGUGAAAA____AAGUAAAAAAAA_A___GGAAU
................((((((((((((((.....))))))...))))))))..(((........)))..................................... (-10.90 = -11.93 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:48 2006