Locus 3047

Sequence ID X_DroMel_CAF1
Location 8,148,212 – 8,148,306
Length 94
Max. P 0.962998
window4986

overview

Window 6

Location 8,148,212 – 8,148,306
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 96.38
Mean single sequence MFE -19.56
Consensus MFE -17.46
Energy contribution -17.70
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.70
Structure conservation index 0.89
SVM decision value 1.55
SVM RNA-class probability 0.962998
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8148212 94 - 22224390
AAAAUUGCUGAUGGAACGAAUGCACUUCCGGGUUAAUAUUCAAACGGCAAGUGUACACAAAAAAGCUGAGCAAGCUUGGCAAAAACUAGAUAAU
....(((((...........((((((((((..(........)..))).))))))).......(((((.....))))))))))............ ( -20.70)
>DroSec_CAF1 51827 94 - 1
AAAAUUGCUGAUGGAACGAAUGCACUUCCGGGUUAAUAUUCAAACAGCAAGUGCACACAAAAAAGCUGAGCUAGCUUGGCACAAACUAGAUAAU
....((((((..((((.(......)))))((((....))))...))))))((((........((((((...)))))).))))............ ( -20.10)
>DroSim_CAF1 33122 94 - 1
AAAAUUGCUGAUGGAACGAAUGCACUUCCGGGUUAAUAUUCAAACAGCAAGUGCACACAAAAAAGCUGAGCUAGCUUGGCAAAAACUAGAUAAU
....((((((..((((.(......)))))((((....))))...))))))..............((..((....))..)).............. ( -18.80)
>DroEre_CAF1 42364 93 - 1
AAAAUUGCUGAUGGAAUGAAUGCACUUCCGGGUUAAUAUUCAAACAGCAAGUGCACACAAAAAAGCUGAGCAAGCUU-GCAAAAACUAGAUAAU
....((((........((..(((((((.(..(((........))).).)))))))..))...(((((.....)))))-))))............ ( -18.50)
>DroYak_CAF1 39191 94 - 1
AAAAUUGCUGAUGGAAUGAAUGCACUUCCGGGUUAAUAUUCAAACAGCAAGUGCACACAAAAAAGCUGAGCCAGCUGGGCAAAAACUAGAUAAU
....(((((.......((..(((((((.(..(((........))).).)))))))..))....(((((...))))).)))))............ ( -19.70)
>consensus
AAAAUUGCUGAUGGAACGAAUGCACUUCCGGGUUAAUAUUCAAACAGCAAGUGCACACAAAAAAGCUGAGCAAGCUUGGCAAAAACUAGAUAAU
....((((((..((((.(......)))))((((....))))...))))))..............((((((....)))))).............. (-17.46 = -17.70 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:43 2006