Locus 3035

Sequence ID X_DroMel_CAF1
Location 8,110,004 – 8,110,107
Length 103
Max. P 0.850659
window4968

overview

Window 8

Location 8,110,004 – 8,110,107
Length 103
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 91.71
Mean single sequence MFE -25.85
Consensus MFE -21.56
Energy contribution -21.19
Covariance contribution -0.37
Combinations/Pair 1.09
Mean z-score -1.92
Structure conservation index 0.83
SVM decision value 0.79
SVM RNA-class probability 0.850659
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8110004 103 + 22224390
GCUAAACAGAAUUGGCGAAAUGCGAUUGGGAAACUGGGCGGCCGAGUUGUAAAGUUAAAGUGCGUAAAAGCGUUAAGAGUGUGAAAUUGGCC-----GGCGAAAAGUG
(((((......)))))....(((..(..(....)..).(((((((.(..((...((((...((......)).))))...))..)..))))))-----))))....... ( -26.00)
>DroSec_CAF1 679 97 + 1
GCUAAACAGAAUUGGCGAAAUGCGAUUGGGAAACUGGGCGGCCGAGU------GUUAAAGUGCGUAAAAGCGUUAAGAGUGUGGAAUUGGCC-----GGCGAAAAGUG
(((((......)))))....(((..(..(....)..).(((((((..------.(((....((((....))))........)))..))))))-----))))....... ( -25.00)
>DroSim_CAF1 868 97 + 1
GCUAAACAGAAUUGGCGAAAUGCGAUUGGGAAACUGGGCGGCCGAGU------GUUAAAGUGCGUAAAAGCGUUAAGAGUGUGGAAUUGGCC-----GGCGAAAAGUG
(((((......)))))....(((..(..(....)..).(((((((..------.(((....((((....))))........)))..))))))-----))))....... ( -25.00)
>DroYak_CAF1 1159 102 + 1
GCCAAAGAGAAUUGGCGAAAUGCGAUUGGGAAACUGGGCGGCCGAGU------GUUAAAGUGCGUAAAAGUGUUAAGAGCGUGGAAUUGGCCUGUGCGGCGAAAAGCG
(((((......)))))....((((.(..(....)..).)((((((.(------(((..((..(......)..))...)))).....))))))...)))((.....)). ( -27.40)
>consensus
GCUAAACAGAAUUGGCGAAAUGCGAUUGGGAAACUGGGCGGCCGAGU______GUUAAAGUGCGUAAAAGCGUUAAGAGUGUGGAAUUGGCC_____GGCGAAAAGUG
(((((......)))))....((((.(..(....)..).)((((((.........((((...((......)).))))..........))))))......)))....... (-21.56 = -21.19 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:27 2006