| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,107,432 – 8,107,525 |
| Length | 93 |
| Max. P | 0.996405 |
| Location | 8,107,432 – 8,107,525 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 75.27 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -15.93 |
| Energy contribution | -16.93 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.77 |
| SVM decision value | 2.69 |
| SVM RNA-class probability | 0.996405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8107432 93 - 22224390 GGCUCAAAGCGAAAGCGAAUUUU-UUCGUGCCAAUUGCAGUCGAAAAAACACUGCAUUUUUAUUGCAUUUUUGUUGUAUUAUA----UGUGCCCCAUU (((.(...((....))(((....-)))).)))...((((((.(......)))))))........((((...(((......)))----.))))...... ( -20.80) >DroSec_CAF1 12651 91 - 1 GGCACAAAGCGAAAGCGAAUUUU-UUCGUGCCAAUUGCAGUCGAAAAUACACUGCAUUUUUAU------UUUGUUGCAUUAUAUGUAUGUGCCCUAUU ((((((.((((((((((((....-)))))......((((((.(......)))))))......)------))))))((((...)))).))))))..... ( -24.30) >DroEre_CAF1 12097 75 - 1 GCCACAAAGCGAAAGCGAAUUUUUAUCGUGCCAAUUGCAGUCGAAAAUACACUGCAUUUU----------------UAUUUU-----UUCGC--UGCU .......(((((((((((.......))))......((((((.(......)))))))....----------------.....)-----)))))--)... ( -16.90) >consensus GGCACAAAGCGAAAGCGAAUUUU_UUCGUGCCAAUUGCAGUCGAAAAUACACUGCAUUUUUAU______UUUGUUGUAUUAUA____UGUGCCCUAUU (((((...((....))(((.....))))))))...((((((.(......))))))).......................................... (-15.93 = -16.93 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:26 2006