Locus 3023

Sequence ID X_DroMel_CAF1
Location 8,083,622 – 8,083,718
Length 96
Max. P 0.572623
window4950

overview

Window 0

Location 8,083,622 – 8,083,718
Length 96
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 76.87
Mean single sequence MFE -30.99
Consensus MFE -20.88
Energy contribution -21.74
Covariance contribution 0.86
Combinations/Pair 1.05
Mean z-score -1.11
Structure conservation index 0.67
SVM decision value 0.08
SVM RNA-class probability 0.572623
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8083622 96 + 22224390
GAACGCGAGCCCCAAUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGCGACGAGUCAUAAUGGGUUCUAAAGCACCCGC--------------AACCACCA-CACUACCAU
...(((((((((((.(((((....))))).)))).)).......)))))............((((.(....).))))..--------------........-......... ( -29.31)
>DroSec_CAF1 586 96 + 1
GAGCGCGAGCCCCAAUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGCGACGAGUCAUAAUGGGGUCUACAGCACCCCC--------------AACCAACA-CACUACCAC
..((((((((((((.(((((....))))).)))).)).......))))).)..........((((((....).))))).--------------........-......... ( -31.31)
>DroEre_CAF1 585 96 + 1
GAGCGCGAGCCCCAAUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGCGACGAGUCAUAAUGGGGUCAUCAGCACCCCC--------------UACCACUA-CACUACCAC
..((((((((((((.(((((....))))).)))).)).......))))).).(((......((((((....).))))).--------------....))).-......... ( -31.41)
>DroYak_CAF1 593 111 + 1
GAGCGCGAGCCCCAAUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGCGACGAGUCAUAAUGGGGUCUUCAGCACCCCCUCCUCCCACUGCACUACCACUACCACUACCAC
..((((((((((((.(((((....))))).)))).)).......))))((.(((.......((((((....).)))))))).)).....)).................... ( -33.32)
>DroMoj_CAF1 980 90 + 1
GAGCGCGAGCCCCAAUGGGUGCCCGCGCAGUGGGUGCACAACAAUCGCGACGAAUCAUAAUGUCUUCAUCGGCGACUG--------------------CUG-CCCCAACUC
..(((((.(((((...))).)).)))))..((((.(((...((.((((((.(((..........))).)).)))).))--------------------.))-))))).... ( -33.40)
>DroPer_CAF1 814 81 + 1
GAGCGCGAGCCGCAGUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGGGACGAGUCAUAG-GGAUUCACUGGAACCCGG--------------CCC---------------
..(.((..(((.((.(((((....))))).))))))).).......(((..(((((....-.))))).((((...))))--------------)))--------------- ( -27.20)
>consensus
GAGCGCGAGCCCCAAUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGCGACGAGUCAUAAUGGGGUCAUCAGCACCCCC______________AACCACUA_CACUACCAC
...(((((((((((.(((((....))))).)))).)).......)))))............(((..........))).................................. (-20.88 = -21.74 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:10 2006