| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,072,395 – 8,072,502 |
| Length | 107 |
| Max. P | 0.889071 |
| Location | 8,072,395 – 8,072,502 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.97 |
| Mean single sequence MFE | -36.90 |
| Consensus MFE | -28.80 |
| Energy contribution | -28.03 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.889071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8072395 107 + 22224390 AACCACUCGGUGGGUGGUGUCGGUGGUGCCACCGCCUGCUGUUCCGCUUAUUUCAUCAUUUGCAGCUCGCUAGCUAGCACUUUGAAAAAAC-CCACCACACCCCGCCA ........(((((((((((..(((((.....))))).((......))...(((((.....(((((((....)))).)))...)))))....-.)))))...)))))). ( -35.30) >DroSec_CAF1 54267 107 + 1 AGCCACUCGGGGGGUGGUGUCGGUGGUGCCACCGCCCGCUGUUCCGCUCAUUUCAUCAUUUGCAGCUCGCUAGCUGGCUCUUUGGAAACAC-CAAACCCACCCACCCA ........(((((((((.((.((((...(((..(((.((((....(((((..........)).)))....)))).)))....)))...)))-)..)))))))).))). ( -41.00) >DroEre_CAF1 41612 101 + 1 --CAACUCGGUGGGUGGUGGCGGUGGUGCCGCCGCCUGCUGUUCCGCUUAUUUCAUCAUUUGCAGCUCG----CUAGCUCUUUGAAAACCUACCAUCCCACUCUGCC- --......(((((((((((((((((....))))))).(((((...................)))))...----..................)))).)))))).....- ( -34.41) >consensus A_CCACUCGGUGGGUGGUGUCGGUGGUGCCACCGCCUGCUGUUCCGCUUAUUUCAUCAUUUGCAGCUCGCUAGCUAGCUCUUUGAAAACAC_CCAACCCACCCAGCCA ........(((((((((((.((((((.((....))))))))...)))...(((((......(((((......))).))....)))))...........))))).))). (-28.80 = -28.03 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:07 2006