Locus 3014

Sequence ID X_DroMel_CAF1
Location 8,052,014 – 8,052,118
Length 104
Max. P 0.632970
window4935

overview

Window 5

Location 8,052,014 – 8,052,118
Length 104
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 92.67
Mean single sequence MFE -19.67
Consensus MFE -17.33
Energy contribution -17.75
Covariance contribution 0.42
Combinations/Pair 1.08
Mean z-score -1.35
Structure conservation index 0.88
SVM decision value 0.20
SVM RNA-class probability 0.632970
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8052014 104 + 22224390
C-CCAAUGCCGAUCCCCUCGUGCUUCCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC
.-...(((.((((.......(((.....))).....((((((.....))))))........)))).)))...(((((((.((..........)).)))))))... ( -20.30)
>DroSec_CAF1 34121 104 + 1
C-CCAAUGCCGAUCCCCUCGUGCUUCCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC
.-...(((.((((.......(((.....))).....((((((.....))))))........)))).)))...(((((((.((..........)).)))))))... ( -20.30)
>DroSim_CAF1 9602 104 + 1
C-CCAAUGCCGAUCCCCUCGUGCUUCCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC
.-...(((.((((.......(((.....))).....((((((.....))))))........)))).)))...(((((((.((..........)).)))))))... ( -20.30)
>DroEre_CAF1 22110 103 + 1
--CCAAUGCCGAUCCCCUUGUGCUACCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGCCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC
--...(((.((((.......(((.....))).....((((((.....))))))........)))).)))...(((((((.((..........)).)))))))... ( -20.30)
>DroYak_CAF1 28020 105 + 1
CGCAAAUGCCGAUCCCCUCGUGCUUCCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC
.((....(((((.....))).))....(((((((...((((..((((.((....((.(......).))...)).)))).)))).....)))))))....)).... ( -20.60)
>DroAna_CAF1 31868 105 + 1
UGCCACUGCCUCUGCCCCCCCUCUACUAACGAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUUAGCUCGU
..............................(((...((((((.....))))))..)))............(((((((((.((..........)).))))))).)) ( -16.20)
>consensus
C_CCAAUGCCGAUCCCCUCGUGCUUCCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC
.....(((.((((.......(((.....))).....((((((.....))))))........)))).)))...(((((((.((..........)).)))))))... (-17.33 = -17.75 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:57 2006