Locus 3006

Sequence ID X_DroMel_CAF1
Location 8,009,770 – 8,009,867
Length 97
Max. P 0.558381
window4925

overview

Window 5

Location 8,009,770 – 8,009,867
Length 97
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 83.07
Mean single sequence MFE -32.83
Consensus MFE -25.59
Energy contribution -25.78
Covariance contribution 0.20
Combinations/Pair 1.16
Mean z-score -1.46
Structure conservation index 0.78
SVM decision value 0.05
SVM RNA-class probability 0.558381
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8009770 97 + 22224390
---------------------G-CGGACUUACACUGAAGUACGUGGCCAGAUUGAUGGGAAACAGCUUCAUGGCGGUCAGCGUGAUGGGCUGCUGGGCGCGAUGAAGAUAGUAGAGCAG
---------------------(-((.((((......)))).))).((...((((...(....)..((((((.(((.((((((........)))))).))).)))))).))))...)).. ( -31.30)
>DroSec_CAF1 12 97 + 1
---------------------G-CGGACUUACACUGAAGUAGGUGGCCAGAUUGAUGGGGAACAGCUUCAUGGCGGUCAGCGUGAUGGGCUGCUGGGCGCGAUGGAGAUAGUAGAGCAG
---------------------(-(..((((((......))))))..(((......)))...((..((((((.(((.((((((........)))))).))).))))))...))...)).. ( -32.30)
>DroSim_CAF1 20 97 + 1
---------------------G-CGGACUUACACUGAAGUAGGUGGCCAAAUUGAUGGGGAACAGCUUCAUGGCGGUCAGCGUGAUGGGCUGCUGGGCGCGAUGGAGAUAGUAGAGCAG
---------------------(-(..((((((......))))))..(((......)))...((..((((((.(((.((((((........)))))).))).))))))...))...)).. ( -31.50)
>DroEre_CAF1 138 112 + 1
GU-------UACUCCUUCAGAGACACACUUACACUGAAGUAGGUGGCCAGAUUGAUGGGGAACAGCUUCAUGGCGGUCAGAGUGAUGGGCUGCUGGGCGCGAUGGAGAUAGUAGAGCUG
((-------(.((((.((((.....(((((((......)))))))......)))).)))))))..((((((.(((.(((((((.....))).)))).))).))))))............ ( -39.00)
>DroYak_CAF1 22 96 + 1
-----------------------GACACUCACACUGAAGUAGGUGGCCAGAUUGAUGGGAAAGAGCUUCAUGGCGGUCAGAGUGAUGGGCUGCUGGGCGCGAUGGAGAUAGUAGAGGAG
-----------------------....(((.((((......)))).(((......))).......((((((.(((.(((((((.....))).)))).))).))))))......)))... ( -30.20)
>DroAna_CAF1 1572 113 + 1
--AAACGACUAUAUUUUC---G-UAUACUCACACUGAAGUAGGUGGCCAGGUUGAUGGGAAAGAGCUUCAUGGCCGUGAGCGUGAUGGGCUGCUGGGCGUGGUGGAGGUAGAAGAGGAG
--...........(((((---.-..((((..((((...((.((..((((((((..........)))))(((.(((....).)).))))))..))..))..))))..))))...))))). ( -32.70)
>consensus
_____________________G_CAGACUUACACUGAAGUAGGUGGCCAGAUUGAUGGGAAACAGCUUCAUGGCGGUCAGCGUGAUGGGCUGCUGGGCGCGAUGGAGAUAGUAGAGCAG
...........................(((.((((......)))).(((......))).......((((((.(((.((((((........)))))).))).))))))......)))... (-25.59 = -25.78 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:48 2006