Locus 300

Sequence ID X_DroMel_CAF1
Location 976,981 – 977,099
Length 118
Max. P 0.864138
window454

overview

Window 4

Location 976,981 – 977,099
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.84
Mean single sequence MFE -22.00
Consensus MFE -3.00
Energy contribution -5.32
Covariance contribution 2.32
Combinations/Pair 1.13
Mean z-score -1.81
Structure conservation index 0.14
SVM decision value 0.84
SVM RNA-class probability 0.864138
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 976981 118 + 22224390
CGCUUAUCAGCCACCUGAUAAGCUAAA-AUUACCCAGGUAAUAGGGAAAGUUUACUUUUCUAGUAUUUCACCCCAUACCAUCCCC-UGUAAGCUGCAUUUAAAUGCAAAAUACUCAGUCA
.(((((((((....)))))))))....-(((((....))))).(((((((....)))))))(((((((.......(((.......-.)))...(((((....))))))))))))...... ( -27.60)
>DroSec_CAF1 59966 116 + 1
C--UGAUAAG-CAGCUGAUAAGCUAAA-AUUACCCAGGUAGUAGGGAAAGUUUACUUUUCUAGUAUUUCAAAUUAUACCAUCCCCCUAUAAUCUGCAUUUUAAUGCAAAAUCCUAAGUCA
.--......(-(((((....)))((((-((....(((((.((((((((((....))))....((((........)))).....)))))).))))).)))))).))).............. ( -22.20)
>DroSim_CAF1 39081 116 + 1
C--UGAUAAG-CAGCUGAUAAGCUAAA-AUUACCCAGGUAGUAGGGAAAGUUUACUUUUCUAGUAUUUCAAAUUAUACCAUCCCCUUAUAAUCUGCAUUUUAAUGCAAAAUCCUAAGUCA
.--......(-(((((....)))((((-((....(((((.((((((((((....))))....((((........)))).....)))))).))))).)))))).))).............. ( -19.50)
>DroEre_CAF1 73160 104 + 1
CGUUC----G-CACCCGAUAAGCUUUAAAUUACCCAGAA--------AAGUUUACAUUCCUC-UUUUAAAACUUCCAUGAUCC--CUAUAAAGUGAUAUUAAAUGCGAAAUCCUCAGUCA
..(((----(-((...((((.((((((.......((...--------((((((.........-.....))))))...))....--...))))))..))))...))))))........... ( -14.08)
>DroYak_CAF1 65323 114 + 1
UGUUUAUCAG-CGCCCGAUAAGCUCUA-AUUACCCAGAAGAUAGGG-AAGUUUACAUUCCUC-UAUGUAACUUUCCAUGAUUC--CUAUUGGAUGAUGGUAAAUGCAAAAUCCGCAGUCA
.(((((((..-.....)))))))....-.(((((.........(((-(((((.((((.....-.)))))))))))).....((--(....)))....))))).(((.......))).... ( -26.60)
>consensus
CG_UGAUAAG_CACCUGAUAAGCUAAA_AUUACCCAGGUAAUAGGGAAAGUUUACUUUUCUAGUAUUUCAAAUUAUACCAUCCCCCUAUAAGCUGCAUUUAAAUGCAAAAUCCUCAGUCA
................(((........................(((((((....)))))))................................(((((....))))).........))). ( -3.00 =  -5.32 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:09 2006