Locus 2986

Sequence ID X_DroMel_CAF1
Location 7,945,691 – 7,945,782
Length 91
Max. P 0.954241
window4897

overview

Window 7

Location 7,945,691 – 7,945,782
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 75.28
Mean single sequence MFE -21.97
Consensus MFE -13.04
Energy contribution -14.75
Covariance contribution 1.71
Combinations/Pair 1.31
Mean z-score -2.01
Structure conservation index 0.59
SVM decision value 1.44
SVM RNA-class probability 0.954241
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7945691 91 - 22224390
UGGGCCACAAAUAUUACUGUUAUUUGUACCGCUAUUCACUGGCUUAUUUAUGAACCGGUUCACUCUUGCACGGAUAUCCUGCGAGAAAAAA
(((((((((((((.......)))))))...((((.....)))).............)))))).(((((((.((....)))))))))..... ( -25.40)
>DroSec_CAF1 8050 90 - 1
UGGGCCACAAAUAUUACUGUUAUUUGUACCGCUACUUACUGGCUAAUUUAUGAACCGGUUCACUCUUGCACGGAUAUCCUGCGAUUA-AAA
(((((((((((((.......)))))))...((((.....)))).............))))))...(((((.((....)))))))...-... ( -20.60)
>DroSim_CAF1 2718 90 - 1
UGGGCCACAAAUAUUACUGUUAUUUGUACCGCUAUUUACUGGCUAAUUUAUGAACCGGUUCACUCUUGCACGGAUAUCCUGCGAGAA-AAA
(((((((((((((.......)))))))...((((.....)))).............)))))).(((((((.((....))))))))).-... ( -25.40)
>DroEre_CAF1 10416 87 - 1
UGGACCACAAAUAUUACUGUUAUUAGUGCCGCUAUUCACUGGCUAAUUUCUGAACCGGUUCACCCUGGCAAGGAUAU---GCGAGAA-AAA
((((((.........((((....))))((((........)))).............))))))..((.(((......)---)).))..-... ( -17.80)
>DroYak_CAF1 3841 90 - 1
UGGACCACAACUAUUACUGUUAUUAGUACCGUUAUGCGCUGGCUAAUUUAUGAACCGGUUCACUCUUGCAAGGAUAUCCUGCGAGAA-AAA
((((((..(((.......)))((((((..((.....))...)))))).........)))))).(((((((.((....))))))))).-... ( -23.50)
>DroAna_CAF1 12364 78 - 1
AAAAGCUUAAA----------AAUUAUACCGUUAUUUAGUGGCCAACCAUGGAACUAGUUCC-AGGCCCAAGGAAAGCCAA-GCUUU-GGA
.(((((((...----------.................(.((((.....(((((....))))-))))))..((....))))-)))))-... ( -19.10)
>consensus
UGGACCACAAAUAUUACUGUUAUUUGUACCGCUAUUCACUGGCUAAUUUAUGAACCGGUUCACUCUUGCAAGGAUAUCCUGCGAGAA_AAA
(((((((((((((.......)))))))...((((.....)))).............)))))).(((((((.((....)))))))))..... (-13.04 = -14.75 +   1.71)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:22 2006