Locus 2968

Sequence ID X_DroMel_CAF1
Location 7,904,538 – 7,904,638
Length 100
Max. P 0.730038
window4873

overview

Window 3

Location 7,904,538 – 7,904,638
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 82.56
Mean single sequence MFE -10.47
Consensus MFE -9.73
Energy contribution -10.07
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -0.72
Structure conservation index 0.93
SVM decision value 0.42
SVM RNA-class probability 0.730038
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7904538 100 + 22224390
AUAAUAUAUAUGAAUAAUAUUCACAGUAUAAAGGAAAAUCUCUCAAAAUAUAAAAGUGAAACGAACAAAUCUUUCCAACAAAUCACAUCUUUGGGAAUGU
...................(((((..((((...((.......))....))))...)))))...........(((((((............)))))))... (  -8.40)
>DroSec_CAF1 5135 81 + 1
-------------------AUCACAGUAUAAAGGAGAAUCUCUCAAAAUAUAAAAGUGAAACGAUUAAAUCUUUCCAACAAAUCACAUCUUUGGGAAUGU
-------------------.((((..((((...(((.....)))....))))...))))............(((((((............)))))))... ( -11.50)
>DroSim_CAF1 8255 81 + 1
-------------------AUCACAGUAUAAAGGAGAAUCUCUCAAAAUAUAAAAGUGAAACGACUAAAUCUUUCCAACAAAUUACAUCUUUGGGAAUGU
-------------------.((((..((((...(((.....)))....))))...))))............(((((((............)))))))... ( -11.50)
>consensus
___________________AUCACAGUAUAAAGGAGAAUCUCUCAAAAUAUAAAAGUGAAACGAAUAAAUCUUUCCAACAAAUCACAUCUUUGGGAAUGU
....................((((..((((...(((.....)))....))))...))))............(((((((............)))))))... ( -9.73 = -10.07 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:00 2006