Locus 2956

Sequence ID X_DroMel_CAF1
Location 7,899,862 – 7,899,982
Length 120
Max. P 0.571706
window4851

overview

Window 1

Location 7,899,862 – 7,899,982
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 98.61
Mean single sequence MFE -60.55
Consensus MFE -56.62
Energy contribution -57.12
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.94
SVM decision value 0.08
SVM RNA-class probability 0.571706
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7899862 120 + 22224390
UACCGUGUGCGGUGGCAUUGUGCUAAUCGGUGGUAUGGACGGUGCACCGCCGGCCGUCGAUGAAACCGUGCCGCCCAUGGCGGAUACGGGUCGGGCGGCGAUCGCUCCUCCCGCACCGGA
..(((.((((((((((((.((....((((..(((.(((.(((....)))))))))..))))...)).))))))))............(((..(((((.....)))))..)))))))))). ( -60.40)
>DroSec_CAF1 486 120 + 1
UACCGUGUGCGGUGGCAUUGUGCUAAUCGGUGGUAUGGACGGUGCACCUCCGGCCGUCGAUGAAACCGUGCCGCCCAUGGCGGAUACGGGUCGGGCGGCGAUCGCUCCUCCCGCACCGGA
..(((.((((((((((((.((....((((..(((.((((.((....)))))))))..))))...)).))))))))............(((..(((((.....)))))..)))))))))). ( -59.10)
>DroSim_CAF1 3603 120 + 1
UACCGUGUGCGGUGGCAUUGUGCUAAUCGGUGGUAUGGACGGUGCACCUCCGGCCGUCGAUGAAACCGUGCCGCCCAUGGCGGAUACGGGUCGGGCGGCGAUCGCUCCUCCCGCACCGGA
..(((.((((((((((((.((....((((..(((.((((.((....)))))))))..))))...)).))))))))............(((..(((((.....)))))..)))))))))). ( -59.10)
>DroYak_CAF1 3615 120 + 1
UACCGUGUGCGGUGGCAUUGUGCUAAUCGGUGGUAUGGACGGUGCACCGCCGGCCGUCGAUGAAACCGUGCCGCCCAUGGCGGAUACGGGCCGGGCGGCGGUCGCUCCUCCCGCACCGGA
..(((.((((((((.(((((.......))))).)))(((.((.(((((((((.(((.....(...((((((((((...))))).))))).)))).))))))).)).))))))))))))). ( -63.60)
>consensus
UACCGUGUGCGGUGGCAUUGUGCUAAUCGGUGGUAUGGACGGUGCACCGCCGGCCGUCGAUGAAACCGUGCCGCCCAUGGCGGAUACGGGUCGGGCGGCGAUCGCUCCUCCCGCACCGGA
..(((.((((((((((((.((....((((..(((.(((.(((....)))))))))..))))...)).))))))))............(((..(((((.....)))))..)))))))))). (-56.62 = -57.12 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:40 2006