Locus 2948

Sequence ID X_DroMel_CAF1
Location 7,895,351 – 7,895,450
Length 99
Max. P 0.949260
window4839

overview

Window 9

Location 7,895,351 – 7,895,450
Length 99
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 89.15
Mean single sequence MFE -18.72
Consensus MFE -18.30
Energy contribution -18.22
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -1.40
Structure conservation index 0.98
SVM decision value 1.39
SVM RNA-class probability 0.949260
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7895351 99 + 22224390
-------------GUAUAA----AAUA-AACAAACAAACAAAACGCGUCC--UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGAUGAAUCGC
-------------......----....-................(((...--.....)))((((.(((((.((((((...((((...........))))))))))))))).)))).... ( -20.10)
>DroSec_CAF1 6049 99 + 1
-------------GUAUAA----AAUA-AACAAACAAACAAAACGCGUCC--UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGAUGAAUCGC
-------------......----....-................(((...--.....)))((((.(((((.((((((...((((...........))))))))))))))).)))).... ( -20.10)
>DroEre_CAF1 5765 99 + 1
-------------GUAUAA----AAUA-AACAAACAAACAAAACGCGUCC--UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGAUGAAUCGC
-------------......----....-................(((...--.....)))((((.(((((.((((((...((((...........))))))))))))))).)))).... ( -20.10)
>DroWil_CAF1 13076 118 + 1
AAACAGUUAAGAAUUAAAAAAAAAACA-AAAAAAAAACUAAACGGCGUCCUCUAACCUGCUUCACUGUCACUUGAGUCACUCGAACUGCUAUCACUCGAACUCGAUGACGACGAAUCGC
...........................-..............((.((((..(......).......((((.((((((...((((...........))))))))))))))))))...)). ( -14.30)
>DroYak_CAF1 6013 99 + 1
-------------GUAUAA----AAUA-AACAAACAAACAAAACGCGUCC--UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGACGAAUCGC
-------------......----....-.................(((((--......).......((((.((((((...((((...........))))))))))))))))))...... ( -17.60)
>DroAna_CAF1 6383 100 + 1
-------------GUAUAA----AAUAAAACAAACAAACAAAUCGCGUCC--UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGAUGAAUCGC
-------------......----.....................(((...--.....)))((((.(((((.((((((...((((...........))))))))))))))).)))).... ( -20.10)
>consensus
_____________GUAUAA____AAUA_AACAAACAAACAAAACGCGUCC__UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGAUGAAUCGC
..........................................................(.((((.(((((.((((((...((((...........))))))))))))))).)))).).. (-18.30 = -18.22 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:28 2006