Locus 2947

Sequence ID X_DroMel_CAF1
Location 7,890,278 – 7,890,377
Length 99
Max. P 0.888282
window4838

overview

Window 8

Location 7,890,278 – 7,890,377
Length 99
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 75.50
Mean single sequence MFE -14.82
Consensus MFE -7.00
Energy contribution -7.04
Covariance contribution 0.04
Combinations/Pair 1.10
Mean z-score -2.04
Structure conservation index 0.47
SVM decision value 0.95
SVM RNA-class probability 0.888282
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7890278 99 + 22224390
CCCCCUCGCCUCGUCCACGCCCCCCCCCUCCC--------ACUCCUUU--------UUUUUUAUAAUGCUCCAGCCAAAUGGAUGA-G-GACAUUGGGUAAUCGCAACCAAACCAAC
..(((...(((((((((.(........)....--------........--------...........((....))....)))))))-)-).....)))................... ( -17.00)
>DroSec_CAF1 676 81 + 1
CCCCCU-----CGUCCACCCC-----CCUC--------------C--U--------UUUCUUAUAAUGCUCCAGCCAAUUGGAUAA-G-GACAUUGGGUAAUCGCAACCAAACCAAC
......-----((...((((.-----..((--------------(--(--------(.(((......((....)).....))).))-)-))....))))...))............. ( -14.40)
>DroSim_CAF1 676 80 + 1
CCCCCU-----CGUCCACCC------CCUC--------------C--U--------UUUCUUAUAAUGCUCCAGCCAAAUGGAUAA-G-GACAUUGGGUAAUCGCAACCAAACCAAC
......-----((...((((------..((--------------(--(--------(.(((......((....)).....))).))-)-))....))))...))............. ( -14.10)
>DroEre_CAF1 723 80 + 1
CCCCCU-----CGUCCACCCCUCCU-------------------------------UUUUUUAUAUUGUUCCAGCCAAAUGGAUAAAG-GACAUUGGGUAAUCGCAACCAAACCAAC
......-----((...((((.((((-------------------------------((...........((((......)))).))))-))....))))...))............. ( -13.10)
>DroYak_CAF1 736 112 + 1
CCCCCU-----CGUCCACCCCUCCUCCAUCUCUUCUCUUCUCUUCUUUUUUUUUUCUUUUUGAAAUUGCUCCAGCCAAAUGGAUAAAGGGACAUUGGGUAAUCGCAACCAAACCAAC
..(((.-----.((((....................................((((.....))))....((((......)))).....))))...)))................... ( -15.50)
>consensus
CCCCCU_____CGUCCACCCC_CC__CCUC______________C__U________UUUUUUAUAAUGCUCCAGCCAAAUGGAUAA_G_GACAUUGGGUAAUCGCAACCAAACCAAC
..................................................................(((....(((.((((..........)))).)))....)))........... ( -7.00 =  -7.04 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:27 2006