| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,818,855 – 7,818,948 |
| Length | 93 |
| Max. P | 0.998688 |
| Location | 7,818,855 – 7,818,948 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 75.09 |
| Mean single sequence MFE | -18.69 |
| Consensus MFE | -14.42 |
| Energy contribution | -14.87 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.77 |
| SVM decision value | 3.19 |
| SVM RNA-class probability | 0.998688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7818855 93 + 22224390 ACUCACUUAAGGCCCAUAUAUCAAUGGCCCGCGUUGACUUCACUCACCCCCCCCCCCCCUCUCCCCGCGACUUGUGGGCAUUAUCAAUGCAAA ..........((.((((......)))).))(((((((.....(((((..........................))))).....)))))))... ( -17.97) >DroSec_CAF1 21405 85 + 1 ACACACUUAAGGCCCAUAUAUCAAUGGCCCGCGUUGACUCCAACAACCCCUCCCCC--------CCACGACUUGUGGGCAUUAUCAAUGCAAA ..........((.((((......)))).))(((((((..................(--------((((.....))))).....)))))))... ( -19.30) >DroYak_CAF1 22629 85 + 1 ACUCACUUAAGGCCCAUAUAUCAAUGGCCCGCGUUGACUUCCCGCACUUG--------UUCUUGUUGCUGUUGUUGUGCAUUAUCAAUGCAAA ..........((.((((......)))).))(((((((......((((...--------..(........).....))))....)))))))... ( -18.80) >consensus ACUCACUUAAGGCCCAUAUAUCAAUGGCCCGCGUUGACUUCACCCACCCC_CCCCC___UCU__CCGCGACUUGUGGGCAUUAUCAAUGCAAA ..........((.((((......)))).))(((((((.....(((((..........................))))).....)))))))... (-14.42 = -14.87 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:38 2006