Locus 2912

Sequence ID X_DroMel_CAF1
Location 7,796,797 – 7,796,917
Length 120
Max. P 0.548796
window4771

overview

Window 1

Location 7,796,797 – 7,796,917
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -31.60
Consensus MFE -28.00
Energy contribution -28.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.89
SVM decision value 0.03
SVM RNA-class probability 0.548796
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7796797 120 - 22224390
CAUAUCCAAAAUCAACAUAGUAAGUCACAACUCUUACCGUGAACAAGCGUUCGUACUCGCGCGGCAAUUCAAGAAGUCGCGGCUGCUGCCACAACGAAUGCUGAUUGAUGAGCACCAAUU
..((((...((((..((..(((((........)))))..))....(((((((((......(((((..........)))))(((....)))...))))))))))))))))).......... ( -34.00)
>DroSim_CAF1 281 120 - 1
CCUAUCCAAAAUCCACAUAGUAAAUAACAACUCUCACCGUGAACAAGCGUUCGUACUCGCGCGGCAAUUCAAGAAGUCGCGGCUGCUGCCACAACGAAUGCUGAUUGAUGAGCACCAAUU
..............................((((((..(....).(((((((((......(((((..........)))))(((....)))...)))))))))...))).)))........ ( -28.10)
>DroYak_CAF1 281 120 - 1
CCCAUCCCAAAACAACGUAGUAAAUAACAAAGCUCACCGUGAACAAGCGUUCGUACUCGCGCGGCAAUUCGAGAAGUCGCGGCUGCUGCCACAACGAAUGCUGAUUGAUGAGCACCAAUU
...............................(((((.((......(((((((((......(((((..........)))))(((....)))...)))))))))...)).)))))....... ( -32.70)
>consensus
CCUAUCCAAAAUCAACAUAGUAAAUAACAACUCUCACCGUGAACAAGCGUUCGUACUCGCGCGGCAAUUCAAGAAGUCGCGGCUGCUGCCACAACGAAUGCUGAUUGAUGAGCACCAAUU
.....................................(((.((..(((((((((......(((((..........)))))(((....)))...)))))))))..)).))).......... (-28.00 = -28.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:28 2006