Locus 290

Sequence ID X_DroMel_CAF1
Location 965,535 – 965,648
Length 113
Max. P 0.996693
window438

overview

Window 8

Location 965,535 – 965,648
Length 113
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 78.76
Mean single sequence MFE -34.90
Consensus MFE -22.14
Energy contribution -23.60
Covariance contribution 1.46
Combinations/Pair 1.16
Mean z-score -3.03
Structure conservation index 0.63
SVM decision value 2.73
SVM RNA-class probability 0.996693
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 965535 113 + 22224390
UUAUUUAUCGGUUAAUAUAUGUAUAUAACGUAUAUGUAUAUGUACGAUCGCGCUGAUCGGUCAGUCAGAUGGGUCAGAUCGUUUGGAUCGGUCUGCAUGUGGACAUGUGGAUA
........(((((..((((((((((((.....))))))))))))(((.((..((((((.(((.....))).))))))..)).))))))))(((..((((....))))..))). ( -37.90)
>DroSec_CAF1 48398 113 + 1
UUAUUUAUCGGUUAAUAUAUGCAUUUAACGUAUAUGUAUAUGUACGACCGCGAUGAUCGGUCGGUCAGAUGGGUCAGAUCGUUUGGAUCGGUCUGCAUGUGGACAUGUGGAUA
........(((((.((((((((((.........))))))))))..)))))...(((((.(((.....))).)))))((((.....)))).(((..((((....))))..))). ( -36.60)
>DroYak_CAF1 52101 96 + 1
UUAUUUAUCGGUUUAUAUAUGCAC---------ACCUAUGCAUACGAUCGCGCUGAUCGA----CCAGAUGGGUUAGAUGGGUUAGAUCGGUCUGCAUAUCG----GUGGAUA
.....((((.((........)).(---------(((((((((..(((((..(((.(((((----((.....)))).))).)))..)))))...))))))..)----))))))) ( -30.20)
>consensus
UUAUUUAUCGGUUAAUAUAUGCAU_UAACGUAUAUGUAUAUGUACGAUCGCGCUGAUCGGUC_GUCAGAUGGGUCAGAUCGUUUGGAUCGGUCUGCAUGUGGACAUGUGGAUA
.(((((((.......((((((((......((((((....))))))((((....(((((.(((.....))).)))))((((.....)))))))))))))))).....))))))) (-22.14 = -23.60 +   1.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:54 2006