| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,754,685 – 7,754,784 |
| Length | 99 |
| Max. P | 0.808391 |
| Location | 7,754,685 – 7,754,784 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.34 |
| Mean single sequence MFE | -33.47 |
| Consensus MFE | -19.06 |
| Energy contribution | -20.20 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7754685 99 - 22224390 A---AC------CGACUCACCUGCCCACUCGCCCAUUUUGGAGAGAUCCACCGAGGAGCCAAAGACCUUGGGGCCAACAACAUUGGCGUAAAUCCAGGGCAGGACCUU .---..------.......(((((((.(((..((.....)).))).....((((((.........)))))).(((((.....))))).........)))))))..... ( -34.80) >DroVir_CAF1 4503 102 - 1 AGUCAC------ACACUUACCUGCCCAUUCGCCCAUCUCGGCCAGAUUGACCGAGGAGCCGCACAGCCUGGGUCCCAGCACAUUCGCAUAGAUCCAGGGCAAGACCUU ......------.......(.(((((....((...((((((.(.....).))))))....))......((((((...((......))...))))))))))).)..... ( -28.00) >DroGri_CAF1 7265 107 - 1 AAACG-UAAUUGAGACUUACCUGCCCACUCGCCCAUCUUCGAAAGAUUCACCGAGGAGCCAAACAGCUUUGGCCCGAGCACAUUCACAUAGAUCCAGGGCAGGACCUU .....-.............(((((((.((((....((((((..........))))))((((((....)))))).)))).....((.....))....)))))))..... ( -30.60) >DroEre_CAF1 3771 99 - 1 A---AC------CGACUCACCUGCCCACUCGCCCAUUUUGGACAGAUCCACGGAGGAGCCAAAGACCUUUGGCCCCACCACAUUGGCGUAAAUCCAGGGCAGGACCUU .---..------.......(((((((...((((.....((((....)))).((.((.((((((....)))))).)).)).....))))........)))))))..... ( -36.60) >DroYak_CAF1 3743 99 - 1 A---AC------CGACUCACCUGCCCACUCGCCCAUUUUGGCAAGAUCCACGGAGGAGCCAAAGACCUUGGGGCCAACGACAUUGGCGUAGAUCCAGGGCAGGACCUU .---..------.......(((((((.....(((((((((((....(((.....))))))))))....))))(((((.....))))).........)))))))..... ( -36.60) >DroAna_CAF1 3828 94 - 1 --------------GCUCACCUGCCCACUCGCCCAUCUUGGCCAGGUUCACCGAGGAACCGAACACCUUGGGCCCCACCACAUUGGCGUAGAUCCAGGGCAGGACCUU --------------.....(((((((....(((......)))..((.((.((((((.........))))))((.(((......))).)).)).)).)))))))..... ( -34.20) >consensus A___AC______CGACUCACCUGCCCACUCGCCCAUCUUGGACAGAUCCACCGAGGAGCCAAACACCUUGGGCCCCACCACAUUGGCGUAGAUCCAGGGCAGGACCUU ...................(((((((....(((((..((((.....(((.....))).))))......)))))..........(((.......))))))))))..... (-19.06 = -20.20 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:00 2006