| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,746,329 – 7,746,442 |
| Length | 113 |
| Max. P | 0.565857 |
| Location | 7,746,329 – 7,746,442 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.49 |
| Mean single sequence MFE | -24.57 |
| Consensus MFE | -14.41 |
| Energy contribution | -15.19 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7746329 113 - 22224390 AUAUCAA-UUUGUGAAAUAUUGCGAAAAUGCUAAAGCGCAAGCAUUGGCGCGGUGAUCA-AACAAAUUGCAAGCGAAAAUGUCCAGUGAUUGCGUUAAAAUAAGUGGAUGAUAUU-- (((((((-(((((....(((((((..((((((........))))))..)))))))....-.)))))))............(((((.(.(((.......))).).)))))))))).-- ( -28.70) >DroPse_CAF1 6156 117 - 1 CGGUGUACAUUGAAAAAUAUUGCGUGAAUACAAAUGUAUUAACACUACAGAAGUGAAAUUAACAAUUUUCGAAUGGAAAUCAUAAGUGAUGCCAUUAAAAAUCACAGAUAGUUCUCG .(((...(((((((((.((.(((((........))))).)).((((.....))))..........))))).))))...)))....(((((..........)))))............ ( -18.20) >DroSec_CAF1 5767 113 - 1 AUAUCAA-UUUGUGAAAUAUUGCAAAAAUGCUAAAGCGCAAGUACUGGCGCGGUGAUCA-AACAAAUUGCAAGCGAAAAUUUCCAGUGAUUGCGUUAAAAGAAGUGGAUUAUAUU-- .......-..(((((..(((((((....)))...(((((((.(((((((((.(..((..-.....))..)..))).......)))))).)))))))......))))..)))))..-- ( -24.01) >DroSim_CAF1 5425 113 - 1 AUAUCAA-UUUGUGAAAUAUUGCGAAAAUGAUAAAGCGCAAGCACUGGCGCGGUGAUCA-AACAAAUUGCAAGCGAAAAUUUCCAGUGAUUGCGUUAAAAUAAGUGGAUGAUAUU-- ((((((.-((((..(....)..))))........(((((((.(((((((((.(..((..-.....))..)..))).......)))))).)))))))............)))))).-- ( -28.31) >DroEre_CAF1 7280 115 - 1 AUUUCUACUUUGUGAAAUAUUGCGAAAAUGCUAAAGCGCAAGCAUUGGCGCGGUGAUAAUUACAAAUUACAAUCGAAAAUGUCCAGUGAUUGCGUUAAAAUAAGUGGAUGAUAUU-- ...(((((((((..(....)..))))........(((((((.((((((((((((..((((.....))))..))))....)).)))))).))))))).......))))).......-- ( -26.90) >DroYak_CAF1 7370 114 - 1 AUUUCGAUUUUGUGAAAUAUUGCGAAAAUGCUAAAGCGCAAGCACUGGCGCGGUGAACA-AACAAAUUACAAGCAAAAAUGUCCAGUGAUUGCGAUAAAAUAAGUGGAUGAUAUU-- ((((((......)))))).((((......((((..((....))..))))...((((...-......))))..))))....(((((.(.(((.......))).).)))))......-- ( -21.30) >consensus AUAUCAA_UUUGUGAAAUAUUGCGAAAAUGCUAAAGCGCAAGCACUGGCGCGGUGAUCA_AACAAAUUGCAAGCGAAAAUGUCCAGUGAUUGCGUUAAAAUAAGUGGAUGAUAUU__ ........(((((((....)))))))........(((((((.(((((((((.(((((........)))))..))).......)))))).)))))))..................... (-14.41 = -15.19 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:55 2006