Locus 2888

Sequence ID X_DroMel_CAF1
Location 7,722,534 – 7,722,628
Length 94
Max. P 0.577998
window4731

overview

Window 1

Location 7,722,534 – 7,722,628
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 81.77
Mean single sequence MFE -26.88
Consensus MFE -18.17
Energy contribution -19.32
Covariance contribution 1.14
Combinations/Pair 1.36
Mean z-score -1.52
Structure conservation index 0.68
SVM decision value 0.09
SVM RNA-class probability 0.577998
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7722534 94 - 22224390
CUUUACCAGUCGCGCCUUUUUAGCCGAUCACUUGGUUAGGCAUCGGAAACAUCGCAAUCAGCUGGUGAUUUUGGCUGAAAAGAUCGUCGACAAU
........((((((.(((((((((((((((((((((...((...(....)...)).))))...)))))))..))))))))))..)).))))... ( -32.20)
>DroSec_CAF1 7261 94 - 1
CUUCACCAGUCGCGCCUUUUUAGCCGAUCACUUGGUUAGGCAUCGGAAACAUCGCAAUCAGCUGGUGAUUUUGGCCGAAAAGAUCGUCGACAAU
........((((((.(((((..((((((((((((((...((...(....)...)).))))...)))))))..)))..)))))..)).))))... ( -28.70)
>DroSim_CAF1 5626 94 - 1
CUUCACCAGUCGUGCCUUUUUAGCCGAUCACUUGGUUAGGCAUCGGAAACAUCGCAAUCAGCUGGUGAUUUUGGCCGAAAAGAUCGUCGACAAU
..((((((((.((((((....((((((....)))))))))))).(....)..........))))))))..(((((.((.....))))))).... ( -28.10)
>DroEre_CAF1 6996 94 - 1
CUUCACCAGUCGCGCCUUUUUGGCCGAUCACCUGGUUAGGCAUAGGAAACAUCGCAAUCGGCUGGUGAUUUUGGCCGAAAAGAUCAUCGAUAAU
........((((...(((((((((((((((((.((((..((...(....)...))....)))))))))))..)))))))))).....))))... ( -31.30)
>DroYak_CAF1 7802 94 - 1
CUUCACCAGUCGCGCCUUUCUGGCCGCCCACCUGGUUGGGCAUAGGCACCAUCGCAAUCAGCUGUUGAUUUUGGGCGAAAAGAUCAUUGACAAU
........(((..(((.....)))((((((...(((.((((....)).)))))((.....)).........))))))...........)))... ( -25.00)
>DroPer_CAF1 6710 94 - 1
AUUCACCAGUACCGCGUUUUUGGCCACCCAUCUCACUCAUCACAAGGAGCAUCGCCACCGAUUCAUCAUCCUCGCCGAGAAGAUCCUGGACAAC
.....((((.....(.((((((((...........(((........))).((((....))))...........)))))))))...))))..... ( -16.00)
>consensus
CUUCACCAGUCGCGCCUUUUUAGCCGAUCACCUGGUUAGGCAUAGGAAACAUCGCAAUCAGCUGGUGAUUUUGGCCGAAAAGAUCGUCGACAAU
........((((...(((((((((((((((((.((((..((...(....)...))....)))))))))..)))))))))))).....))))... (-18.17 = -19.32 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:52 2006