Locus 2885

Sequence ID X_DroMel_CAF1
Location 7,708,395 – 7,708,515
Length 120
Max. P 0.530830
window4727

overview

Window 7

Location 7,708,395 – 7,708,515
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -36.17
Consensus MFE -27.83
Energy contribution -30.17
Covariance contribution 2.33
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.77
SVM decision value -0.01
SVM RNA-class probability 0.530830
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7708395 120 + 22224390
GAUGAUGCUGACGUAAAAGUCGCGCCAUAAAAAUUCAUUGCCAAACGAGCCAAAGUAUUGCGGCAAUAGAUGGAGAUGAGGACGAGGAUGUGGCAGUGGCGGUGGCAGUGGCAGUGGAUG
.(((.(((.(((......)))))).)))....(((((((((((.....((((..(((((((.(((.(...((..........))..).))).))))).))..))))..))))))))))). ( -38.40)
>DroSim_CAF1 16253 120 + 1
GAUGAUGCUGACGUAAAAGUCGCGCCAUAAAAAUUCAUUGCCAAACGAGCCAAAGUAUUGCGGCAAAGGAUGGAGAUGAGGACGAGGAUGUGGCAGUGGUGGUGGCAGUGGCAGUGGAUG
.(((.(((.(((......)))))).)))....(((((((((((.....((((.(.((((((.(((..(..(........)..).....))).)))))).)..))))..))))))))))). ( -38.00)
>DroEre_CAF1 6011 120 + 1
GCUGAUGCUGACGUAAAAGUCGCGCCAUAAAAAUUCAUUGCCAAACGAGCCAAAGUAUUGCGGCAAUGGAUGGAGAUGAGGAUGAGGAUGAGGACGAGGAUGUGGCAGUGGCAGUGGCAG
(((..(((((((......)))..((((((....(((((..(((..((.(((..........)))..))..)))..))))).....(........).....))))))...))))..))).. ( -32.10)
>consensus
GAUGAUGCUGACGUAAAAGUCGCGCCAUAAAAAUUCAUUGCCAAACGAGCCAAAGUAUUGCGGCAAUGGAUGGAGAUGAGGACGAGGAUGUGGCAGUGGAGGUGGCAGUGGCAGUGGAUG
.(((.(((.(((......)))))).)))....(((((((((((.....((((...((((((.(((.......................))).))))))....))))..))))))))))). (-27.83 = -30.17 +   2.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:48 2006