Locus 2882

Sequence ID X_DroMel_CAF1
Location 7,706,792 – 7,706,890
Length 98
Max. P 0.996607
window4723

overview

Window 3

Location 7,706,792 – 7,706,890
Length 98
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 68.22
Mean single sequence MFE -23.17
Consensus MFE -13.24
Energy contribution -14.17
Covariance contribution 0.94
Combinations/Pair 1.33
Mean z-score -2.21
Structure conservation index 0.57
SVM decision value 2.72
SVM RNA-class probability 0.996607
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7706792 98 - 22224390
A-------------UAAUUAUCCAUGUAGUUAACAUAUAGUUGUAU---AUUUCGUAGAGCCCACAGUGCUGUGGGCUU---GUGUAAUUUAUUCAUUGGAUUUUCUAGUGCUUCAC
(-------------(((((((..((((.....))))))))))))..---........(((((((((....)))))))))---............((((((.....))))))...... ( -24.50)
>DroSec_CAF1 5429 81 - 1
A-------------UAAUUAUGUGUG-------CAUAUAGUUGUAU---AUUUCGUAGA-------------UGGGUUUCAUCUAUAAUUUAUUCAUUGGAUUUUCUAGUGCUUCAC
(-------------(((((((((...-------.))))))))))..---.....(((((-------------((.....)))))))........((((((.....))))))...... ( -16.60)
>DroSim_CAF1 14727 99 - 1
A-------------UAAUUAUGUGUGCAUUU-GCAUAUAGUUGUAU---AUUUCGUAGAGCCCACAGUGC-GUGGGUUUCAUCUAUAAUUUAUUCAUUGGAUUUCCUAGUGCUUCAC
(-------------(((((((((((......-))))))))))))..---.....(((((((((((.....-))))))....)))))........((((((.....))))))...... ( -26.20)
>DroEre_CAF1 4483 109 - 1
CAAUUCUCUGCACAUAGGCAUAUGUA-------UAUGUACAUUUUUUGUAUUUUUUAGAGCCCACGGUGC-GUGGGUUCCAGCUAUAAUUUAUUCAUGGGAUUUUCUAGUGCCCCAC
.........((((...(((.......-------...(((((.....)))))......(((((((((...)-))))))))..)))............((((....))))))))..... ( -25.40)
>consensus
A_____________UAAUUAUGUGUG_______CAUAUAGUUGUAU___AUUUCGUAGAGCCCACAGUGC_GUGGGUUUCAUCUAUAAUUUAUUCAUUGGAUUUUCUAGUGCUUCAC
....................(((((((.....)))))))..................((((((((......))))))))...............((((((.....))))))...... (-13.24 = -14.17 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:44 2006