| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,702,406 – 7,702,496 |
| Length | 90 |
| Max. P | 0.743385 |
| Location | 7,702,406 – 7,702,496 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 96.27 |
| Mean single sequence MFE | -28.33 |
| Consensus MFE | -25.83 |
| Energy contribution | -26.16 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.743385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7702406 90 + 22224390 AUGAGAGACUGUGGCAUCCAGGAGAUGCUGGAGACUAAACUACUUGAUGUCCGCCUGGUCAUAAGGCCGGAAGUCUGUCAAUUUGCGUAU .(((.(((((((((((((.((.((.....(....)....)).)).)))).))))((((((....)))))).))))).))).......... ( -31.10) >DroSec_CAF1 444 88 + 1 AUGAGAGACUGUGGCAUCCAGCAGA--CUAGAGACUAAACUACUUGAUGUCCGCCUGGUCAUAAGGCCGGAAGUCUGUAAAUUUGCGUAU ...(.(((((((((((((.((.((.--.(((...)))..)).)).)))).))))((((((....)))))).))))).)............ ( -24.70) >DroSim_CAF1 8560 88 + 1 AUGAGAGACUGUGGCAUCCAGGAGA--CUAGAGACUAAACUACUUGAUGUCCGCCUGGUCAUAAGGCCGGAAGUCUGUCAAUUUGCGUAU .(((.(((((((((((((.((.((.--.(((...)))..)).)).)))).))))((((((....)))))).))))).))).......... ( -29.20) >consensus AUGAGAGACUGUGGCAUCCAGGAGA__CUAGAGACUAAACUACUUGAUGUCCGCCUGGUCAUAAGGCCGGAAGUCUGUCAAUUUGCGUAU .(((.(((((((((((((.((.((...............)).)).)))).))))((((((....)))))).))))).))).......... (-25.83 = -26.16 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:39 2006