Locus 2876

Sequence ID X_DroMel_CAF1
Location 7,701,893 – 7,701,987
Length 94
Max. P 0.513033
window4716

overview

Window 6

Location 7,701,893 – 7,701,987
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 97.87
Mean single sequence MFE -32.13
Consensus MFE -31.80
Energy contribution -31.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.99
SVM decision value -0.04
SVM RNA-class probability 0.513033
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7701893 94 + 22224390
UUCCCUAGCGCAUCGGACGUGGCCACGUUUAGAUAGCCAUGUCGAGGUGUUUGCAUAAUGAAUGAGCCCCAACCAGCGGCAACAACAGCCGCUG
.......(((((((.((((((((............))))))))..)))))..))...................(((((((.......))))))) ( -31.80)
>DroSim_CAF1 8057 94 + 1
UUCCCUAGCGCAUCGGACGUGGCCACGUUUAGAUAGCCAUGUCGAGGUGUUUGCAUAAUGAAUGAGCCCCAACCAGCGGCAACAACAGCCGCUG
.......(((((((.((((((((............))))))))..)))))..))...................(((((((.......))))))) ( -31.80)
>DroYak_CAF1 603 94 + 1
UUGCCCAGCGCAUCGGACGUGGCCACGUUUAGAUAGCCAUGUCGAGGUGUUUGCAUAAUGAAUGAGCCCCGACCAGCGGCAACAACAGCCGCUG
.(((..(((((.(((.(((((((............)))))))))).))))).)))..................(((((((.......))))))) ( -32.80)
>consensus
UUCCCUAGCGCAUCGGACGUGGCCACGUUUAGAUAGCCAUGUCGAGGUGUUUGCAUAAUGAAUGAGCCCCAACCAGCGGCAACAACAGCCGCUG
.......(((((((.((((((((............))))))))..)))))..))...................(((((((.......))))))) (-31.80 = -31.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:38 2006