| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,681,516 – 7,681,607 |
| Length | 91 |
| Max. P | 0.870947 |
| Location | 7,681,516 – 7,681,607 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 80.48 |
| Mean single sequence MFE | -25.79 |
| Consensus MFE | -11.96 |
| Energy contribution | -12.78 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.24 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7681516 91 - 22224390 GAAAUUUCAUAAGCUCACCAACUGGCCCCAUC-GACCCCCUUUUAAAUGGCAAUUAAAUGCAAUGCACCGAU--GGGGGUCAGUUGCACCCUCA ..................((((((((((((((-(....((........))........(((...))).))))--.)))))))))))........ ( -25.50) >DroSec_CAF1 95543 87 - 1 GAAAUUUCAUAAGCUCCCCAACUGGCCCCAUCUGACCCCCUUUUAAAUGGCAAUUAAAU-----GCACCGAU--GGGGGUCAGUGGCACCCUCA .......................((..(((.(((((((((.........(((......)-----))......--))))))))))))..)).... ( -26.66) >DroEre_CAF1 94416 72 - 1 GAAAUUUCAUAAGCC-CCCAACUGGCCCCAUCG--CCCCCUUUUAAAUGGCAAUUAAAU-----GCACCGUU--GGGGGUCA------------ ............(((-((((((.(((......)--))............(((......)-----))...)))--))))))..------------ ( -22.80) >DroYak_CAF1 96881 89 - 1 GAAAUUUCAUAAGCCGCCCAACUGACCCCAGCGACCCCCCUUUUAAAUGGCAAUUAAAU-----GCAACGUCUGGGGGGUCACAGGCACCCUCA ............(((......(((....))).((((((((.........(((......)-----)).......))))))))...)))....... ( -28.19) >consensus GAAAUUUCAUAAGCCCCCCAACUGGCCCCAUCGGACCCCCUUUUAAAUGGCAAUUAAAU_____GCACCGAU__GGGGGUCAGUGGCACCCUCA ....................(((((((((.........((........))..................(.....)))))))))).......... (-11.96 = -12.78 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:32 2006