Locus 2869

Sequence ID X_DroMel_CAF1
Location 7,677,870 – 7,677,986
Length 116
Max. P 0.657370
window4705

overview

Window 5

Location 7,677,870 – 7,677,986
Length 116
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 88.89
Mean single sequence MFE -23.73
Consensus MFE -16.25
Energy contribution -18.13
Covariance contribution 1.88
Combinations/Pair 1.00
Mean z-score -2.04
Structure conservation index 0.68
SVM decision value 0.26
SVM RNA-class probability 0.657370
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7677870 116 - 22224390
UAUAUAUAUGUAGAUGUACAAUACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUAUCUAUUUGGCCUCACUGGCAUUCGGAGCAUUACGCCUUUGUGCCAGUUCCAGCUGCUUUAA
((.(((((.(((((((.................))))))).))))).)).............(((...((((((((..((.((.....))))..))))))))....)))....... ( -25.03)
>DroSec_CAF1 91965 109 - 1
UAU--AUAUGUAGAUGU-----ACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUAUCUAUUUGGCCUCACUGGCAUUCGGAGCAUUAGGCCUUUGUGCCAGUUCCAGCUGCUUUAA
.((--(((.(((((((.-----...........))))))).)))))................(((...((((((((..((.((.....))))..))))))))....)))....... ( -25.20)
>DroSim_CAF1 70727 109 - 1
UAU--AUAUGUAGAUGU-----ACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUAUCUAUUUGGCCUCACUGGCAUUCGGAGCAUUAGGCCUUUGUGCCAGUUCCAGCUGCUUUAA
.((--(((.(((((((.-----...........))))))).)))))................(((...((((((((..((.((.....))))..))))))))....)))....... ( -25.20)
>DroEre_CAF1 91134 100 - 1
UCC--AUAUG------U-----ACCUCCAUCUCCAUC---CUAUAUUUAUAAGUAUCUGUUUGCCCUCUCUGGCAUGCGGAGCAUUAGGCCUUUGUGCCAGUUCCAGCUGCUUUAA
...--.....------.-----...............---..........(((((.((((.((((......)))).))(((((....(((......))).))))))).)))))... ( -19.50)
>consensus
UAU__AUAUGUAGAUGU_____ACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUAUCUAUUUGGCCUCACUGGCAUUCGGAGCAUUAGGCCUUUGUGCCAGUUCCAGCUGCUUUAA
.....(((.(((((((.................))))))).)))................((((....((((((((..((.((.....))))..)))))))).))))......... (-16.25 = -18.13 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:28 2006