Locus 2865

Sequence ID X_DroMel_CAF1
Location 7,670,795 – 7,670,896
Length 101
Max. P 0.500000
window4698

overview

Window 8

Location 7,670,795 – 7,670,896
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 87.45
Mean single sequence MFE -32.44
Consensus MFE -23.38
Energy contribution -24.26
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -1.57
Structure conservation index 0.72
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7670795 101 - 22224390
CCAAAACUCUUAUACGGCAAGACCAUACUCUUCGAAAAGGCGAGCUCUUCGGCCGACUUCGUGGCAGGACACGAGGUCCUUGCGUCGCUGCCGACGCCUGC
...............(((((((......))))((((.((.....)).)))))))(((((((((......)))))))))...((((((....)))))).... ( -32.40)
>DroSec_CAF1 84873 101 - 1
CCAAAACUCUUAUACGGCAAACCAAAACUCUUCUAAAAUGCGAGCUCUUCGGCCGCCUUCGUGGCAGGACACGAGGUCCUUGCGUCGCUGCCGACGCCUGC
...............(((.....................(((((..(((((.(((((.....))).))...)))))..)))))((((....)))))))... ( -31.40)
>DroSim_CAF1 63667 101 - 1
CCAAAACUCUUAUACGGCAAACCCAAACUCUUCUAAAAUGCGAGCCCUUCGGCCGCCUUCGUGGCAGGACACGAGGUCCUUCCGUCGCUGCCGACGCCUGC
..............(((((....................(((.(((....))))))....((((((((((.....)))))...))))))))))........ ( -28.20)
>DroEre_CAF1 84042 95 - 1
CCACAACUCUUAUACGGCAC------ACUCUUCUAAAACGCGAGCUCGUCGGUCGAGCUCGUGGCAGGACACGAGGUCCUUGCGUCGCUGCCGACGCCUGC
...............(((..------.............(((((((((.....)))))))))((((((((.((((...)))).))).)))))...)))... ( -37.90)
>DroYak_CAF1 85368 95 - 1
CCACCACUCUUAUACGGCAA------ACUCUACGAAAUGCCAAACUCUUCGGCGGACUUCGUGGCAGGACACGAGGUCCUUGCGUCGCUGCCGACGCCUGC
...............((((.------...........)))).........(((((((((((((......))))))))))....((((....)))))))... ( -32.30)
>consensus
CCAAAACUCUUAUACGGCAA__C_A_ACUCUUCUAAAAGGCGAGCUCUUCGGCCGACUUCGUGGCAGGACACGAGGUCCUUGCGUCGCUGCCGACGCCUGC
...............(((.....................(((((..(....)..(((((((((......))))))))))))))((((....)))))))... (-23.38 = -24.26 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:22 2006