| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,670,549 – 7,670,659 |
| Length | 110 |
| Max. P | 0.903012 |
| Location | 7,670,549 – 7,670,659 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 83.23 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -29.99 |
| Energy contribution | -29.33 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.903012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7670549 110 - 22224390 CCCCAAUUCCCACCCCCCCCCCCCUUUGGCAGUCCUUGCUGCUGGCAAUCAGCGAAACGUUACGUGCGUUGCCUG--CUUUUUGUGUUUUUGUCCUGUUCCACAGGACGAGU- ...........................((((((....)))))).((((..((((.(((((.....)))))...))--))..))))...(((((((((.....))))))))).- ( -30.50) >DroEre_CAF1 83798 108 - 1 UAUCC--CCCCACCCCCUUCCCCCUUUGGCAGUCCUCGCUGCUGGCAAUCAGCGGAACGUUACGUGCGUUGCCUG--UUUUUUGUGUUUUUGUCCUGUUCCACAGGACGGGU- .....--((((((..............((((((....))))))((((((..(((........)))..))))))..--......))).....((((((.....))))))))).- ( -33.90) >DroYak_CAF1 85093 110 - 1 UUUCU--UAGUAC-CCUUCCCCCCUACGGCAGUCCUCGCUGCUGGCAAUCAGCGAAACGUUACGUGCGUUGCCUGUGUUUUUUGUGUUUUUGUCCUGUGCCGCGGGACGGGCA .....--.....(-((..........(((((((....)))))))((((..((((.(((((.....))))).....))))..))))......((((((.....))))))))).. ( -32.50) >consensus UAUCA__UCCCACCCCCUCCCCCCUUUGGCAGUCCUCGCUGCUGGCAAUCAGCGAAACGUUACGUGCGUUGCCUG__UUUUUUGUGUUUUUGUCCUGUUCCACAGGACGGGU_ ..........(((..............((((((....))))))((((((..(((........)))..))))))..........)))..(((((((((.....))))))))).. (-29.99 = -29.33 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:21 2006